| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474418
Identifier: 113474418
GI number: 113474418
Start: 875936
End: 877123
Strand: Reverse
Name: 113474418
Synonym: Tery_0558
Alternate gene names: NA
Gene position: 877123-875936 (Counterclockwise)
Preceding gene: 113474424
Following gene: 113474417
Centisome position: 11.32
GC content: 28.62
Gene sequence:
>1188_bases ATGCTTTATTTTTTGACTTTTATTATCACCATAATTAGAGATTTTGAACTAGGAGTATATTTTGAGGAACAACTCGGGGG CAGTTTAGAAATATTGGTTTGTTTGAGTATTATTATTTTATTTTTTTGGATTCCTGTTTTTGCATTTGCACATCATTTTT TTATTTTATTCTTTCATACTATTCGGCAAACTTTTTCTAAAAGATATCGTTATAATTTATTTTTTTTTCCAGTGACTATA AGTTGGTGGAAAGCTTTATATAGCTGGTTAGTTACTATTATTAGTACCTTAGCAGCTATTTTAGTATCTACATTGATCCT ACCTTGGTTTAACCTAAATTACACAGTTTTTATCTTAGAAAACAATCGTTTTTTATATCCTAATTCAGTTATTGATAAGT TGCTTTTATTTGTATTTGTTAGTGTTTGGCTAATAGTCGCTACTAAATTATATCAATTTGAATTTATATCAAACAAAAAA AATATGTTAAGTAAAAAAAATCATTATGCTCCAGCTAAAACTTCCAAAGTTTATCCCAAAAATAAAAATAAACCCCAAAT TAATGTTAATAATCTAGATAATCAACCAGCAAAATATAGCACTTATTATGGAGTAAACAAAATCAAAAAATCACAACGTC CCCGTAATATTGTCTACAGTAAAAAACCAAATAAATCTCAAAATTCTTATATAAAAAAAATACAGAAAACTATTAAACGT AATTTTTTAATATTACTAATTCTTCCCATACTTGGATTAGGTATATATTGGTTTTCTACATGGAAATTAGTTTCTAAAAC TGCTGTAGTTGTAGAAAATGAAATTCCTTCGTCAATACCAAAAAAAGTTAATTCTGAAAACCCAGAAGTTAGAGAGGTAA AAACTAAATCTATATCTCTATCTTCTCCAGGAAAACAATCTGCATCCGTGACGACAAAAACTATTGTTTTACCACCACCT GACCCATTTATATTAGCAGTTAACCGAGCTATGAATGCAGCAGAAATGGCACAGTCTGCCCAATCTAAAATAGAATGGGA AGCAGTAGCAAGTCAGTGGCAAGACGCAACAGAATTAATGAAAATTGTCCCTCCATCTCATCCTAAATATAAGAAAGCTA GAAAAAAAATTAACGAATATCAAAGTTACACTAATTATGCTATTAGAGTGGGGAAAACTAATAGGTAA
Upstream 100 bases:
>100_bases CAATTCTTCCTCCTGAACATTAATTATCATGAACAAACCGAAAAAATACTACTTACCAATATGTTTTCGTCATCCTAGTT CTTGCTTAAAAGCTTTAATT
Downstream 100 bases:
>100_bases AGGTAAAACAAAGGAAGAAAAAGAGAAATAATACTAATTTATCAAATATTACTAGAGTTACAGCTTATGCAGAAAAGTCG TAAATAGAATCTGATCAAGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 395; Mature: 395
Protein sequence:
>395_residues MLYFLTFIITIIRDFELGVYFEEQLGGSLEILVCLSIIILFFWIPVFAFAHHFFILFFHTIRQTFSKRYRYNLFFFPVTI SWWKALYSWLVTIISTLAAILVSTLILPWFNLNYTVFILENNRFLYPNSVIDKLLLFVFVSVWLIVATKLYQFEFISNKK NMLSKKNHYAPAKTSKVYPKNKNKPQINVNNLDNQPAKYSTYYGVNKIKKSQRPRNIVYSKKPNKSQNSYIKKIQKTIKR NFLILLILPILGLGIYWFSTWKLVSKTAVVVENEIPSSIPKKVNSENPEVREVKTKSISLSSPGKQSASVTTKTIVLPPP DPFILAVNRAMNAAEMAQSAQSKIEWEAVASQWQDATELMKIVPPSHPKYKKARKKINEYQSYTNYAIRVGKTNR
Sequences:
>Translated_395_residues MLYFLTFIITIIRDFELGVYFEEQLGGSLEILVCLSIIILFFWIPVFAFAHHFFILFFHTIRQTFSKRYRYNLFFFPVTI SWWKALYSWLVTIISTLAAILVSTLILPWFNLNYTVFILENNRFLYPNSVIDKLLLFVFVSVWLIVATKLYQFEFISNKK NMLSKKNHYAPAKTSKVYPKNKNKPQINVNNLDNQPAKYSTYYGVNKIKKSQRPRNIVYSKKPNKSQNSYIKKIQKTIKR NFLILLILPILGLGIYWFSTWKLVSKTAVVVENEIPSSIPKKVNSENPEVREVKTKSISLSSPGKQSASVTTKTIVLPPP DPFILAVNRAMNAAEMAQSAQSKIEWEAVASQWQDATELMKIVPPSHPKYKKARKKINEYQSYTNYAIRVGKTNR >Mature_395_residues MLYFLTFIITIIRDFELGVYFEEQLGGSLEILVCLSIIILFFWIPVFAFAHHFFILFFHTIRQTFSKRYRYNLFFFPVTI SWWKALYSWLVTIISTLAAILVSTLILPWFNLNYTVFILENNRFLYPNSVIDKLLLFVFVSVWLIVATKLYQFEFISNKK NMLSKKNHYAPAKTSKVYPKNKNKPQINVNNLDNQPAKYSTYYGVNKIKKSQRPRNIVYSKKPNKSQNSYIKKIQKTIKR NFLILLILPILGLGIYWFSTWKLVSKTAVVVENEIPSSIPKKVNSENPEVREVKTKSISLSSPGKQSASVTTKTIVLPPP DPFILAVNRAMNAAEMAQSAQSKIEWEAVASQWQDATELMKIVPPSHPKYKKARKKINEYQSYTNYAIRVGKTNR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45932; Mature: 45932
Theoretical pI: Translated: 10.57; Mature: 10.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLYFLTFIITIIRDFELGVYFEEQLGGSLEILVCLSIIILFFWIPVFAFAHHFFILFFHT CHHHHHHHHHHHHHHHCCEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IRQTFSKRYRYNLFFFPVTISWWKALYSWLVTIISTLAAILVSTLILPWFNLNYTVFILE HHHHHHHHHEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE NNRFLYPNSVIDKLLLFVFVSVWLIVATKLYQFEFISNKKNMLSKKNHYAPAKTSKVYPK CCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCC NKNKPQINVNNLDNQPAKYSTYYGVNKIKKSQRPRNIVYSKKPNKSQNSYIKKIQKTIKR CCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH NFLILLILPILGLGIYWFSTWKLVSKTAVVVENEIPSSIPKKVNSENPEVREVKTKSISL HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHCCCCCCCHHHHHHCEEEC SSPGKQSASVTTKTIVLPPPDPFILAVNRAMNAAEMAQSAQSKIEWEAVASQWQDATELM CCCCCCCCCEEEEEEEECCCCCEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH KIVPPSHPKYKKARKKINEYQSYTNYAIRVGKTNR HHCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCC >Mature Secondary Structure MLYFLTFIITIIRDFELGVYFEEQLGGSLEILVCLSIIILFFWIPVFAFAHHFFILFFHT CHHHHHHHHHHHHHHHCCEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IRQTFSKRYRYNLFFFPVTISWWKALYSWLVTIISTLAAILVSTLILPWFNLNYTVFILE HHHHHHHHHEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE NNRFLYPNSVIDKLLLFVFVSVWLIVATKLYQFEFISNKKNMLSKKNHYAPAKTSKVYPK CCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCC NKNKPQINVNNLDNQPAKYSTYYGVNKIKKSQRPRNIVYSKKPNKSQNSYIKKIQKTIKR CCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH NFLILLILPILGLGIYWFSTWKLVSKTAVVVENEIPSSIPKKVNSENPEVREVKTKSISL HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHCCCCCCCHHHHHHCEEEC SSPGKQSASVTTKTIVLPPPDPFILAVNRAMNAAEMAQSAQSKIEWEAVASQWQDATELM CCCCCCCCCEEEEEEEECCCCCEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH KIVPPSHPKYKKARKKINEYQSYTNYAIRVGKTNR HHCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA