Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113474424

Identifier: 113474424

GI number: 113474424

Start: 882852

End: 883628

Strand: Reverse

Name: 113474424

Synonym: Tery_0564

Alternate gene names: NA

Gene position: 883628-882852 (Counterclockwise)

Preceding gene: 113474431

Following gene: 113474418

Centisome position: 11.4

GC content: 42.6

Gene sequence:

>777_bases
ATGAAAAAACTACTGTCTTGTCTACTATTAAGTGTCGCAGCTACATCTGCACTGACAACCTCTGCTCAAGCTGGGACTTT
CTATGTGTCAACTAACGATAATCAGATTGGCGCATTCGATGACTTAACTGGATCTTACACTCAGCTAGCATCAACTCCAA
CTTTTACTGATATTGCTCTCTCGCCTTCGGAGCAACTCTTCGGTATTACTTTCAATAAACTATATTCAGTAGATTTAGAT
TCAGGAACAAATAACTACGTTGGTCGTTTAGGAAAAGGAAAAAGCCTTAATGCTCTAGGTTTTAGCAATGATGGCAAGCT
TTATGGCACAGGGGGTTCCAGTTTCTACTCTATTGACACTAGCTCGGGAAGAGCATCGCGTATATCTTCCAACTCAGGTT
TTTCCAGTAGTGGGGATATTGTTTTTGATGCGGCTCGCGATATTTTTTGGGCAACCTCTGTTGGCGATTCACTATGGAGT
ATTACACGAGATGGTGTAGGCACAAAAATTGGTGATATTGGATACGGAGGAGTTTATGGTCTTGCTTTTGGTGATGATGG
ATCCCTATTTGGCTATACTGCAAATCAAGACCAACTTGAACTTGATCTAGGAACTGGTGTTGGAACTTTCGTCAGGAAAA
TTCCTGGCTTGAATTCTCAAGAAATCTGGGGAGCTACCTCTGAGGCAGATGGAACAGCAGTTCCAGAACCAGGAATGACT
CTAGGGTTACTATCTGTAGGCGCATTATTTGTAGGTTCCCGACTGCAGCGCAAGTAA

Upstream 100 bases:

>100_bases
TTTAGGAACTCATGTTTTGAAGTTGGGCTGAACTATCGGTCTGTGGCGGAGCAATAACTCAAATGCAAACGTTTGAAGTA
TTAACATAATTAATAAAGAT

Downstream 100 bases:

>100_bases
TCTAATTGCTTTGGCTCATTATTAAGAAACTGGGTGTTTGGAAGACATATGTCACTATAATTTTCCATAATGTTTTAGAT
TGGAGCCAGGGCAAAATTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MKKLLSCLLLSVAATSALTTSAQAGTFYVSTNDNQIGAFDDLTGSYTQLASTPTFTDIALSPSEQLFGITFNKLYSVDLD
SGTNNYVGRLGKGKSLNALGFSNDGKLYGTGGSSFYSIDTSSGRASRISSNSGFSSSGDIVFDAARDIFWATSVGDSLWS
ITRDGVGTKIGDIGYGGVYGLAFGDDGSLFGYTANQDQLELDLGTGVGTFVRKIPGLNSQEIWGATSEADGTAVPEPGMT
LGLLSVGALFVGSRLQRK

Sequences:

>Translated_258_residues
MKKLLSCLLLSVAATSALTTSAQAGTFYVSTNDNQIGAFDDLTGSYTQLASTPTFTDIALSPSEQLFGITFNKLYSVDLD
SGTNNYVGRLGKGKSLNALGFSNDGKLYGTGGSSFYSIDTSSGRASRISSNSGFSSSGDIVFDAARDIFWATSVGDSLWS
ITRDGVGTKIGDIGYGGVYGLAFGDDGSLFGYTANQDQLELDLGTGVGTFVRKIPGLNSQEIWGATSEADGTAVPEPGMT
LGLLSVGALFVGSRLQRK
>Mature_258_residues
MKKLLSCLLLSVAATSALTTSAQAGTFYVSTNDNQIGAFDDLTGSYTQLASTPTFTDIALSPSEQLFGITFNKLYSVDLD
SGTNNYVGRLGKGKSLNALGFSNDGKLYGTGGSSFYSIDTSSGRASRISSNSGFSSSGDIVFDAARDIFWATSVGDSLWS
ITRDGVGTKIGDIGYGGVYGLAFGDDGSLFGYTANQDQLELDLGTGVGTFVRKIPGLNSQEIWGATSEADGTAVPEPGMT
LGLLSVGALFVGSRLQRK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26834; Mature: 26834

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLLSCLLLSVAATSALTTSAQAGTFYVSTNDNQIGAFDDLTGSYTQLASTPTFTDIAL
CHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHCCCCCHHHHCCCCCEEEEEE
SPSEQLFGITFNKLYSVDLDSGTNNYVGRLGKGKSLNALGFSNDGKLYGTGGSSFYSIDT
CCCCCEEEEEEEEEEEEECCCCCCHHHHCCCCCCCCEEEEECCCCEEEECCCCEEEEEEC
SSGRASRISSNSGFSSSGDIVFDAARDIFWATSVGDSLWSITRDGVGTKIGDIGYGGVYG
CCCCCEEECCCCCCCCCCCEEEECCCCEEEEECCCCHHHHHHHCCCCCCCCCCCCCCEEE
LAFGDDGSLFGYTANQDQLELDLGTGVGTFVRKIPGLNSQEIWGATSEADGTAVPEPGMT
EEECCCCCEEEEECCCCEEEEEECCCHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCE
LGLLSVGALFVGSRLQRK
EHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKLLSCLLLSVAATSALTTSAQAGTFYVSTNDNQIGAFDDLTGSYTQLASTPTFTDIAL
CHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHCCCCCHHHHCCCCCEEEEEE
SPSEQLFGITFNKLYSVDLDSGTNNYVGRLGKGKSLNALGFSNDGKLYGTGGSSFYSIDT
CCCCCEEEEEEEEEEEEECCCCCCHHHHCCCCCCCCEEEEECCCCEEEECCCCEEEEEEC
SSGRASRISSNSGFSSSGDIVFDAARDIFWATSVGDSLWSITRDGVGTKIGDIGYGGVYG
CCCCCEEECCCCCCCCCCCEEEECCCCEEEEECCCCHHHHHHHCCCCCCCCCCCCCCEEE
LAFGDDGSLFGYTANQDQLELDLGTGVGTFVRKIPGLNSQEIWGATSEADGTAVPEPGMT
EEECCCCCEEEEECCCCEEEEEECCCHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCE
LGLLSVGALFVGSRLQRK
EHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA