| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474424
Identifier: 113474424
GI number: 113474424
Start: 882852
End: 883628
Strand: Reverse
Name: 113474424
Synonym: Tery_0564
Alternate gene names: NA
Gene position: 883628-882852 (Counterclockwise)
Preceding gene: 113474431
Following gene: 113474418
Centisome position: 11.4
GC content: 42.6
Gene sequence:
>777_bases ATGAAAAAACTACTGTCTTGTCTACTATTAAGTGTCGCAGCTACATCTGCACTGACAACCTCTGCTCAAGCTGGGACTTT CTATGTGTCAACTAACGATAATCAGATTGGCGCATTCGATGACTTAACTGGATCTTACACTCAGCTAGCATCAACTCCAA CTTTTACTGATATTGCTCTCTCGCCTTCGGAGCAACTCTTCGGTATTACTTTCAATAAACTATATTCAGTAGATTTAGAT TCAGGAACAAATAACTACGTTGGTCGTTTAGGAAAAGGAAAAAGCCTTAATGCTCTAGGTTTTAGCAATGATGGCAAGCT TTATGGCACAGGGGGTTCCAGTTTCTACTCTATTGACACTAGCTCGGGAAGAGCATCGCGTATATCTTCCAACTCAGGTT TTTCCAGTAGTGGGGATATTGTTTTTGATGCGGCTCGCGATATTTTTTGGGCAACCTCTGTTGGCGATTCACTATGGAGT ATTACACGAGATGGTGTAGGCACAAAAATTGGTGATATTGGATACGGAGGAGTTTATGGTCTTGCTTTTGGTGATGATGG ATCCCTATTTGGCTATACTGCAAATCAAGACCAACTTGAACTTGATCTAGGAACTGGTGTTGGAACTTTCGTCAGGAAAA TTCCTGGCTTGAATTCTCAAGAAATCTGGGGAGCTACCTCTGAGGCAGATGGAACAGCAGTTCCAGAACCAGGAATGACT CTAGGGTTACTATCTGTAGGCGCATTATTTGTAGGTTCCCGACTGCAGCGCAAGTAA
Upstream 100 bases:
>100_bases TTTAGGAACTCATGTTTTGAAGTTGGGCTGAACTATCGGTCTGTGGCGGAGCAATAACTCAAATGCAAACGTTTGAAGTA TTAACATAATTAATAAAGAT
Downstream 100 bases:
>100_bases TCTAATTGCTTTGGCTCATTATTAAGAAACTGGGTGTTTGGAAGACATATGTCACTATAATTTTCCATAATGTTTTAGAT TGGAGCCAGGGCAAAATTTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 258; Mature: 258
Protein sequence:
>258_residues MKKLLSCLLLSVAATSALTTSAQAGTFYVSTNDNQIGAFDDLTGSYTQLASTPTFTDIALSPSEQLFGITFNKLYSVDLD SGTNNYVGRLGKGKSLNALGFSNDGKLYGTGGSSFYSIDTSSGRASRISSNSGFSSSGDIVFDAARDIFWATSVGDSLWS ITRDGVGTKIGDIGYGGVYGLAFGDDGSLFGYTANQDQLELDLGTGVGTFVRKIPGLNSQEIWGATSEADGTAVPEPGMT LGLLSVGALFVGSRLQRK
Sequences:
>Translated_258_residues MKKLLSCLLLSVAATSALTTSAQAGTFYVSTNDNQIGAFDDLTGSYTQLASTPTFTDIALSPSEQLFGITFNKLYSVDLD SGTNNYVGRLGKGKSLNALGFSNDGKLYGTGGSSFYSIDTSSGRASRISSNSGFSSSGDIVFDAARDIFWATSVGDSLWS ITRDGVGTKIGDIGYGGVYGLAFGDDGSLFGYTANQDQLELDLGTGVGTFVRKIPGLNSQEIWGATSEADGTAVPEPGMT LGLLSVGALFVGSRLQRK >Mature_258_residues MKKLLSCLLLSVAATSALTTSAQAGTFYVSTNDNQIGAFDDLTGSYTQLASTPTFTDIALSPSEQLFGITFNKLYSVDLD SGTNNYVGRLGKGKSLNALGFSNDGKLYGTGGSSFYSIDTSSGRASRISSNSGFSSSGDIVFDAARDIFWATSVGDSLWS ITRDGVGTKIGDIGYGGVYGLAFGDDGSLFGYTANQDQLELDLGTGVGTFVRKIPGLNSQEIWGATSEADGTAVPEPGMT LGLLSVGALFVGSRLQRK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26834; Mature: 26834
Theoretical pI: Translated: 4.34; Mature: 4.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLLSCLLLSVAATSALTTSAQAGTFYVSTNDNQIGAFDDLTGSYTQLASTPTFTDIAL CHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHCCCCCHHHHCCCCCEEEEEE SPSEQLFGITFNKLYSVDLDSGTNNYVGRLGKGKSLNALGFSNDGKLYGTGGSSFYSIDT CCCCCEEEEEEEEEEEEECCCCCCHHHHCCCCCCCCEEEEECCCCEEEECCCCEEEEEEC SSGRASRISSNSGFSSSGDIVFDAARDIFWATSVGDSLWSITRDGVGTKIGDIGYGGVYG CCCCCEEECCCCCCCCCCCEEEECCCCEEEEECCCCHHHHHHHCCCCCCCCCCCCCCEEE LAFGDDGSLFGYTANQDQLELDLGTGVGTFVRKIPGLNSQEIWGATSEADGTAVPEPGMT EEECCCCCEEEEECCCCEEEEEECCCHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCE LGLLSVGALFVGSRLQRK EHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKKLLSCLLLSVAATSALTTSAQAGTFYVSTNDNQIGAFDDLTGSYTQLASTPTFTDIAL CHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHCCCCCHHHHCCCCCEEEEEE SPSEQLFGITFNKLYSVDLDSGTNNYVGRLGKGKSLNALGFSNDGKLYGTGGSSFYSIDT CCCCCEEEEEEEEEEEEECCCCCCHHHHCCCCCCCCEEEEECCCCEEEECCCCEEEEEEC SSGRASRISSNSGFSSSGDIVFDAARDIFWATSVGDSLWSITRDGVGTKIGDIGYGGVYG CCCCCEEECCCCCCCCCCCEEEECCCCEEEEECCCCHHHHHHHCCCCCCCCCCCCCCEEE LAFGDDGSLFGYTANQDQLELDLGTGVGTFVRKIPGLNSQEIWGATSEADGTAVPEPGMT EEECCCCCEEEEECCCCEEEEEECCCHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCE LGLLSVGALFVGSRLQRK EHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA