| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474402
Identifier: 113474402
GI number: 113474402
Start: 852585
End: 853763
Strand: Reverse
Name: 113474402
Synonym: Tery_0538
Alternate gene names: NA
Gene position: 853763-852585 (Counterclockwise)
Preceding gene: 113474404
Following gene: 113474401
Centisome position: 11.02
GC content: 36.56
Gene sequence:
>1179_bases ATGGAGCGTAGCATCTCAAAGTCTTTATTCTTCCTACAAAGATTGGAACCAAAAATTTCAGTCATGGATCGCTACATCAT CGCAGAATTAATTGGGCCATTCCTCTTTGGTGTAGGATTATTTTCATCTCTTGGCATAACAGTTGGGGCCATGTTTGAGT TAGTCCGAAAAGTAACAGAATCTGGACTACCTATTTCCATTGCCATTCAAGTGTTTCTCCTAAAAATGCCAGAATTTATT GGTTTGGCATTCCCCATGGCAATGATACTTACTACCCTCATGGTTTACAGTCAGATGTCCGGCCATAGCGAGATAGTTGC CCTCCGTAGCTGTGGCATTAGTATCTATCGAATGATTATACCTACAATCATATTAAGTCTGACAGTAACTACTTTGAGCT TTGCCCTAAATGAAATAATTGTACCCAGTGCCAACTATCAAGCATCTCTCATTTTAGAAAAAACCCTAGAGCAAGAAAAT CCTCCTTTCAAAGAAGAAAATATTTTCTATCCAGAATTTGGTAAAGTCAAGCAACCAGACGGTAGTCAAGACGATACACT GACCCGTTTATTCTATGCCGAAAAATTTGATGGTAAATATATGCAAGGGGTAACTATCCTAGACCGTTCCCAATATGGAG TTGATCAAATAGTGTCCTCTGAGTCAGCAACTTGGAATTCAGCAGAAAATATTTGGGACTTATTTAATGGGACAATTTAT CTTGTATCTCCAGATGGCTCATATCGTAATATTGTAAAATTTGACCATAAAAAATTAAAGCTTTCTACTGCCCCTTTAGA TTTAGCCGGTAAAAGACGTACTTACAAACAAATGAATATTTCTCAATCTTATGAATATTTAGAATTAATGCGACTAAGTG GGAATTATAGGAAAGTTGTTAAAACCCAAGTCAGAATTCAACAAAAATTGGCTTTACCATTTGTATGTTTAGTAATGGGT TTAGTAGGAGCAGCTTTAGGAATTAGACCGCAAAGAAAGGCTAATCGAGGTACTAGCTTTGGTATTAGTGTGATAATTAT TTTTGCCTATTATTTACTTTCATTTATTACAGGAGCAATGGGGCAAAAAGAAATTTTAACTCCTTTTTTGGCTGGATGGT TACCAAATTTTCTAGGTCTTGGAGTAGCAGTATTCTTATTGGCAAGGGTCTCACGTTAA
Upstream 100 bases:
>100_bases TGAAATAATATCCTAAACATCTGTTTCATCAGGACAGAATTAAAAGCCTTATTTGCTTTTAATTTCTTTATTGTAGAGTT GACCTTAAACCTGAAATAAT
Downstream 100 bases:
>100_bases TCAAGTGAGAAGTTATTTTTATAATGGTAATATTGAGCAATTATCTAAAAAAAATTAGCCTGATTATTTTGATAATTCAA GAGTTTTATTATTTCAGGGT
Product: permease YjgP/YjgQ
Products: NA
Alternate protein names: Permease; Permease YjgP/YjgQ; Permease YjgP/YjgQ Family; YjgP/YjgQ Family Protein; YjgP/YjgQ Family Permease; Permease Yjgp/Yjgq Family Protein; Unclassified ABC-Type Transport System Permease; Permease Family Protein; YjgP/YjgQ Permease Superfamily; YjgP/YjgQ Permease; YjgP/YjgQ Family Membrane Protein
Number of amino acids: Translated: 392; Mature: 392
Protein sequence:
>392_residues MERSISKSLFFLQRLEPKISVMDRYIIAELIGPFLFGVGLFSSLGITVGAMFELVRKVTESGLPISIAIQVFLLKMPEFI GLAFPMAMILTTLMVYSQMSGHSEIVALRSCGISIYRMIIPTIILSLTVTTLSFALNEIIVPSANYQASLILEKTLEQEN PPFKEENIFYPEFGKVKQPDGSQDDTLTRLFYAEKFDGKYMQGVTILDRSQYGVDQIVSSESATWNSAENIWDLFNGTIY LVSPDGSYRNIVKFDHKKLKLSTAPLDLAGKRRTYKQMNISQSYEYLELMRLSGNYRKVVKTQVRIQQKLALPFVCLVMG LVGAALGIRPQRKANRGTSFGISVIIIFAYYLLSFITGAMGQKEILTPFLAGWLPNFLGLGVAVFLLARVSR
Sequences:
>Translated_392_residues MERSISKSLFFLQRLEPKISVMDRYIIAELIGPFLFGVGLFSSLGITVGAMFELVRKVTESGLPISIAIQVFLLKMPEFI GLAFPMAMILTTLMVYSQMSGHSEIVALRSCGISIYRMIIPTIILSLTVTTLSFALNEIIVPSANYQASLILEKTLEQEN PPFKEENIFYPEFGKVKQPDGSQDDTLTRLFYAEKFDGKYMQGVTILDRSQYGVDQIVSSESATWNSAENIWDLFNGTIY LVSPDGSYRNIVKFDHKKLKLSTAPLDLAGKRRTYKQMNISQSYEYLELMRLSGNYRKVVKTQVRIQQKLALPFVCLVMG LVGAALGIRPQRKANRGTSFGISVIIIFAYYLLSFITGAMGQKEILTPFLAGWLPNFLGLGVAVFLLARVSR >Mature_392_residues MERSISKSLFFLQRLEPKISVMDRYIIAELIGPFLFGVGLFSSLGITVGAMFELVRKVTESGLPISIAIQVFLLKMPEFI GLAFPMAMILTTLMVYSQMSGHSEIVALRSCGISIYRMIIPTIILSLTVTTLSFALNEIIVPSANYQASLILEKTLEQEN PPFKEENIFYPEFGKVKQPDGSQDDTLTRLFYAEKFDGKYMQGVTILDRSQYGVDQIVSSESATWNSAENIWDLFNGTIY LVSPDGSYRNIVKFDHKKLKLSTAPLDLAGKRRTYKQMNISQSYEYLELMRLSGNYRKVVKTQVRIQQKLALPFVCLVMG LVGAALGIRPQRKANRGTSFGISVIIIFAYYLLSFITGAMGQKEILTPFLAGWLPNFLGLGVAVFLLARVSR
Specific function: Unknown
COG id: COG0795
COG function: function code R; Predicted permeases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43954; Mature: 43954
Theoretical pI: Translated: 9.71; Mature: 9.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MERSISKSLFFLQRLEPKISVMDRYIIAELIGPFLFGVGLFSSLGITVGAMFELVRKVTE CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SGLPISIAIQVFLLKMPEFIGLAFPMAMILTTLMVYSQMSGHSEIVALRSCGISIYRMII CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHH PTIILSLTVTTLSFALNEIIVPSANYQASLILEKTLEQENPPFKEENIFYPEFGKVKQPD HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC GSQDDTLTRLFYAEKFDGKYMQGVTILDRSQYGVDQIVSSESATWNSAENIWDLFNGTIY CCCCHHHHHHHHHHHCCCCHHCCCEEEECCCCCHHHHHCCCCCCCCCHHHHHHHHCCEEE LVSPDGSYRNIVKFDHKKLKLSTAPLDLAGKRRTYKQMNISQSYEYLELMRLSGNYRKVV EECCCCCCCHHHHHCCHHEEEECCCCCCCCCHHHHHHHCHHHHHHHHHHHHHCCCHHHHH KTQVRIQQKLALPFVCLVMGLVGAALGIRPQRKANRGTSFGISVIIIFAYYLLSFITGAM HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHCCC GQKEILTPFLAGWLPNFLGLGVAVFLLARVSR CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MERSISKSLFFLQRLEPKISVMDRYIIAELIGPFLFGVGLFSSLGITVGAMFELVRKVTE CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SGLPISIAIQVFLLKMPEFIGLAFPMAMILTTLMVYSQMSGHSEIVALRSCGISIYRMII CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHH PTIILSLTVTTLSFALNEIIVPSANYQASLILEKTLEQENPPFKEENIFYPEFGKVKQPD HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC GSQDDTLTRLFYAEKFDGKYMQGVTILDRSQYGVDQIVSSESATWNSAENIWDLFNGTIY CCCCHHHHHHHHHHHCCCCHHCCCEEEECCCCCHHHHHCCCCCCCCCHHHHHHHHCCEEE LVSPDGSYRNIVKFDHKKLKLSTAPLDLAGKRRTYKQMNISQSYEYLELMRLSGNYRKVV EECCCCCCCHHHHHCCHHEEEECCCCCCCCCHHHHHHHCHHHHHHHHHHHHHCCCHHHHH KTQVRIQQKLALPFVCLVMGLVGAALGIRPQRKANRGTSFGISVIIIFAYYLLSFITGAM HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHCCC GQKEILTPFLAGWLPNFLGLGVAVFLLARVSR CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA