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The map label for this gene is psbC [H]

Identifier: 113474380

GI number: 113474380

Start: 816445

End: 817824

Strand: Direct

Name: psbC [H]

Synonym: Tery_0513

Alternate gene names: 113474380

Gene position: 816445-817824 (Clockwise)

Preceding gene: 113474376

Following gene: 113474381

Centisome position: 10.53

GC content: 43.91

Gene sequence:

>1380_bases
GTGGTAACGCTGTCTAATTCTATAATAGGGGGTCGTGACCAACAATCCACCGGTTTTGCTTGGTGGTCTGGAAACGCCCG
TCTAATCAATCTATCTGGTAAACTGCTTGGTGCTCACGTAGCCCACGCAGGTTTAATTGTATTTTGGGCCGGAGCAATGA
CTTTGTTTGAAGTTGCTCACTTTGTCCCAGAAAAGCCAATGTATGAACAAGGCTTAATTCTAATGCCCCACGTTGCCACT
ATAGGCTGGGGTGTTGGTCCTGGTGGTGAAATAGTTGACATTTTTCCATTCTTTGTAGTAGGCGTTTTACACCTAATTTC
ATCTGCTGTTCTGGGTTTGGGCGGAATTTATCATGCCGTTCGTGGCCCAGAAACTTTGGAAGACTATTCTTCTTTCTTTG
GATATGACTGGAAAGATAAGAACCAGATGACTAATATTATTGGCTACCACTTAATTATATTAGGTTTGGGCGCATTCTTA
TTAGTAATCAAAGCTGTGTTCTTGGGTGGTGTCTATGATACTTGGGCACCAGGTGGCGGTGATGTACGAGTAATTACTAA
CCCTACTTTGAATCCTGCTGTTATATTTGGTTATCTACTTAAAGCGCCTTTTGGTGGTGAAGGCTGGATCATTGGCGTTA
ATAACATGGAAGATATTATCGGTGGTCATATCTGGATTGGCCTAATTTGTATCTCCGGTGGTATTTGGCATATTCTAACT
AAGCCTTTTGGTTGGGCACGTCGCGCTTTCATCTGGTCTGGAGAAGCTTATCTATCCTACAGTTTGGGCGCCCTGTCTTT
GATGGGTTTAATTGCTGCCGCTTTCGTATGGTTTAACAACACTGCTTATCCTAGCGAATTCTATGGTCCTACTAATGCTG
AAGCTTCTCAAGCTCAGTCTTTTGTGTTCTTAGTCCGTGACCAAAAATTAGGTGCTAATATTGGTTCTGCTCAAGGTCCT
ACTGGTCTTGGTAAGTACCTAATGCGCTCTCCCACTGGTGAGATCATATTCGGTGGTGAAACAATGCGTTTTTGGGACTT
TCGTGGTCCTTGGTTAGAGCCTCTTCGTGGTCCTAACGGTTTAGACTTGAGTAAACTGAAGAACGATATTCAGCCTTGGC
AAGTTCGTCGTGCTGCTGAGTACATGACTCATGCTCCTAATGGTTCTATCAACTCTGTAGGTGGTATTATTACAGATATT
AACGGTTTCAATTATGTAAACCCTCGTGCTTGGTTAGCTGCCGCTCACTTTATTCTTGGTTTCTTCTTCTTAATTGGTCA
CTTGTGGCATGCTGGTCGCGCTCGTGCTGCTGAGGGTGGTTTTGAGAAGGGTCTGGACCGTCAAACTGAGCCAGTACTAT
CTATGCCTAACCTTGACTAA

Upstream 100 bases:

>100_bases
TATACCAAAAATAATTTGCTGAGAGAGGACATCCAAACTGTGATAAATCCTTAACATCAGCTAGATAAAAATTTAGTATT
CCTATGGGAGGTTATACTGC

Downstream 100 bases:

>100_bases
TATCTAGTCATTGTATGTAGCTCGTTTATTGCTAGAATTCTTAAAAAGCCTCACCAAAATTTAGGAGAGGTTTTTATCTA
AATGTTGGCAGGAGACCCGC

Product: photosystem II 44 kDa subunit reaction center protein

Products: NA

Alternate protein names: PSII 43 kDa protein; Protein CP-43; Protein P6 [H]

Number of amino acids: Translated: 459; Mature: 459

Protein sequence:

>459_residues
MVTLSNSIIGGRDQQSTGFAWWSGNARLINLSGKLLGAHVAHAGLIVFWAGAMTLFEVAHFVPEKPMYEQGLILMPHVAT
IGWGVGPGGEIVDIFPFFVVGVLHLISSAVLGLGGIYHAVRGPETLEDYSSFFGYDWKDKNQMTNIIGYHLIILGLGAFL
LVIKAVFLGGVYDTWAPGGGDVRVITNPTLNPAVIFGYLLKAPFGGEGWIIGVNNMEDIIGGHIWIGLICISGGIWHILT
KPFGWARRAFIWSGEAYLSYSLGALSLMGLIAAAFVWFNNTAYPSEFYGPTNAEASQAQSFVFLVRDQKLGANIGSAQGP
TGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLDLSKLKNDIQPWQVRRAAEYMTHAPNGSINSVGGIITDI
NGFNYVNPRAWLAAAHFILGFFFLIGHLWHAGRARAAEGGFEKGLDRQTEPVLSMPNLD

Sequences:

>Translated_459_residues
MVTLSNSIIGGRDQQSTGFAWWSGNARLINLSGKLLGAHVAHAGLIVFWAGAMTLFEVAHFVPEKPMYEQGLILMPHVAT
IGWGVGPGGEIVDIFPFFVVGVLHLISSAVLGLGGIYHAVRGPETLEDYSSFFGYDWKDKNQMTNIIGYHLIILGLGAFL
LVIKAVFLGGVYDTWAPGGGDVRVITNPTLNPAVIFGYLLKAPFGGEGWIIGVNNMEDIIGGHIWIGLICISGGIWHILT
KPFGWARRAFIWSGEAYLSYSLGALSLMGLIAAAFVWFNNTAYPSEFYGPTNAEASQAQSFVFLVRDQKLGANIGSAQGP
TGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLDLSKLKNDIQPWQVRRAAEYMTHAPNGSINSVGGIITDI
NGFNYVNPRAWLAAAHFILGFFFLIGHLWHAGRARAAEGGFEKGLDRQTEPVLSMPNLD
>Mature_459_residues
MVTLSNSIIGGRDQQSTGFAWWSGNARLINLSGKLLGAHVAHAGLIVFWAGAMTLFEVAHFVPEKPMYEQGLILMPHVAT
IGWGVGPGGEIVDIFPFFVVGVLHLISSAVLGLGGIYHAVRGPETLEDYSSFFGYDWKDKNQMTNIIGYHLIILGLGAFL
LVIKAVFLGGVYDTWAPGGGDVRVITNPTLNPAVIFGYLLKAPFGGEGWIIGVNNMEDIIGGHIWIGLICISGGIWHILT
KPFGWARRAFIWSGEAYLSYSLGALSLMGLIAAAFVWFNNTAYPSEFYGPTNAEASQAQSFVFLVRDQKLGANIGSAQGP
TGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLDLSKLKNDIQPWQVRRAAEYMTHAPNGSINSVGGIITDI
NGFNYVNPRAWLAAAHFILGFFFLIGHLWHAGRARAAEGGFEKGLDRQTEPVLSMPNLD

Specific function: The 43 kDa protein (p6) is a component of the core of photosystem II. It is a chlorophyll binding protein [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. PsbC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000932
- InterPro:   IPR005869 [H]

Pfam domain/function: PF00421 PSII [H]

EC number: NA

Molecular weight: Translated: 49961; Mature: 49961

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTLSNSIIGGRDQQSTGFAWWSGNARLINLSGKLLGAHVAHAGLIVFWAGAMTLFEVAH
CEEECCCCCCCCCCCCCCEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FVPEKPMYEQGLILMPHVATIGWGVGPGGEIVDIFPFFVVGVLHLISSAVLGLGGIYHAV
HCCCCCCHHCCCEEECCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGPETLEDYSSFFGYDWKDKNQMTNIIGYHLIILGLGAFLLVIKAVFLGGVYDTWAPGGG
CCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCC
DVRVITNPTLNPAVIFGYLLKAPFGGEGWIIGVNNMEDIIGGHIWIGLICISGGIWHILT
CEEEEECCCCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCEECC
KPFGWARRAFIWSGEAYLSYSLGALSLMGLIAAAFVWFNNTAYPSEFYGPTNAEASQAQS
CCCCCHHEEEEECCCHHEEHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHCCE
FVFLVRDQKLGANIGSAQGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNG
EEEEEECCHHCCCCCCCCCCCHHHHHHHHCCCCCEEECCCEEEEEECCCCCHHHCCCCCC
LDLSKLKNDIQPWQVRRAAEYMTHAPNGSINSVGGIITDINGFNYVNPRAWLAAAHFILG
CCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHH
FFFLIGHLWHAGRARAAEGGFEKGLDRQTEPVLSMPNLD
HHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVTLSNSIIGGRDQQSTGFAWWSGNARLINLSGKLLGAHVAHAGLIVFWAGAMTLFEVAH
CEEECCCCCCCCCCCCCCEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FVPEKPMYEQGLILMPHVATIGWGVGPGGEIVDIFPFFVVGVLHLISSAVLGLGGIYHAV
HCCCCCCHHCCCEEECCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGPETLEDYSSFFGYDWKDKNQMTNIIGYHLIILGLGAFLLVIKAVFLGGVYDTWAPGGG
CCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCC
DVRVITNPTLNPAVIFGYLLKAPFGGEGWIIGVNNMEDIIGGHIWIGLICISGGIWHILT
CEEEEECCCCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCEECC
KPFGWARRAFIWSGEAYLSYSLGALSLMGLIAAAFVWFNNTAYPSEFYGPTNAEASQAQS
CCCCCHHEEEEECCCHHEEHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHCCE
FVFLVRDQKLGANIGSAQGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNG
EEEEEECCHHCCCCCCCCCCCHHHHHHHHCCCCCEEECCCEEEEEECCCCCHHHCCCCCC
LDLSKLKNDIQPWQVRRAAEYMTHAPNGSINSVGGIITDINGFNYVNPRAWLAAAHFILG
CCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHH
FFFLIGHLWHAGRARAAEGGFEKGLDRQTEPVLSMPNLD
HHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905231; 3130247 [H]