| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is yggG [H]
Identifier: 113474375
GI number: 113474375
Start: 810760
End: 811599
Strand: Direct
Name: yggG [H]
Synonym: Tery_0508
Alternate gene names: 113474375
Gene position: 810760-811599 (Clockwise)
Preceding gene: 113474374
Following gene: 113474376
Centisome position: 10.46
GC content: 32.02
Gene sequence:
>840_bases ATGAGCAATCGCAATCCTTCACCAACTAATCGTCAACTTTTAATTATATTAGGAATTTGGACGGGGATTATTGTCATAAT GATTAGCTTAATGATTAGCTTTGTATCCCTGTTAGCTGATTGGGCAATTACTCATATTCCTATTAGTTGGGAACAAAAAT TAGGAGAATTAATAGTCCCGGTTTATGAACAAAAAGCTAAAGATTCTCCTCAACAAGAAATCTTAAATAATCTCTTAGAT CGTTTAGAGTCTCAACTCAATAATAAATTACTAAAAAATAGAGATTATCGAGTTATCTATATTCCCGAAAAAAATGTTAA CGCTTTTGCTATTCCTGGGGATGTTATTGGTATTTTTGAAGGGCTAGTAAAAGAGGTTAAATCAGAAAATGAATTGATGA TGATTTTAGGTCATGAATTAGGACATTTTGCTAATAGAGATCATCTTCGGAATTTAGGGAAAACTTTAGCTATTCGAGTT GCGATCGCTAGTCTTTTTGGAGATAATGCGACTTTAGCTAATAGTGTTGGAGTTGTTATTGAAACTATTAGTAATGCTCG CTATTCTCAGGAACAAGAATATCAAGCAGATGAATTCGGATTAATATTATTAAATAAAACCTATGGTCATGTAACAGGGG CAACGGATTTTTTTAAGAACTTTAAAGAGAAAGAAAACCTAGGCTGGGACTTTTTTTCTAGTCATCCTGCCGGAAACAAG CGTGTCAAAAGACTAGAAAAATTAATTAAACAAAAACAATATAAATTAGGTGAATATTCTGATTTAGAGTTAAATTTACA GTTTAGTGATCAGGAGTTTCGGAAATATAAGCAGAGATAA
Upstream 100 bases:
>100_bases TCAAAGCCGCGGGATTTATCCTCTATTAAATTTTTTAAATCCTTTCCGTCCTACCAAGGGTAGTGATTGAGGTTTTTCGG ATTAATTATTAATTAAACTT
Downstream 100 bases:
>100_bases TTTTTGATTTTTCGTGATTGTTGATTAATTTAGATGACAGTTTCTAAATATTTATGGCAAATGATTTACAGGGTAAATGG TAAAAATTATATATTCCAGG
Product: peptidase M48, Ste24p
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 279; Mature: 278
Protein sequence:
>279_residues MSNRNPSPTNRQLLIILGIWTGIIVIMISLMISFVSLLADWAITHIPISWEQKLGELIVPVYEQKAKDSPQQEILNNLLD RLESQLNNKLLKNRDYRVIYIPEKNVNAFAIPGDVIGIFEGLVKEVKSENELMMILGHELGHFANRDHLRNLGKTLAIRV AIASLFGDNATLANSVGVVIETISNARYSQEQEYQADEFGLILLNKTYGHVTGATDFFKNFKEKENLGWDFFSSHPAGNK RVKRLEKLIKQKQYKLGEYSDLELNLQFSDQEFRKYKQR
Sequences:
>Translated_279_residues MSNRNPSPTNRQLLIILGIWTGIIVIMISLMISFVSLLADWAITHIPISWEQKLGELIVPVYEQKAKDSPQQEILNNLLD RLESQLNNKLLKNRDYRVIYIPEKNVNAFAIPGDVIGIFEGLVKEVKSENELMMILGHELGHFANRDHLRNLGKTLAIRV AIASLFGDNATLANSVGVVIETISNARYSQEQEYQADEFGLILLNKTYGHVTGATDFFKNFKEKENLGWDFFSSHPAGNK RVKRLEKLIKQKQYKLGEYSDLELNLQFSDQEFRKYKQR >Mature_278_residues SNRNPSPTNRQLLIILGIWTGIIVIMISLMISFVSLLADWAITHIPISWEQKLGELIVPVYEQKAKDSPQQEILNNLLDR LESQLNNKLLKNRDYRVIYIPEKNVNAFAIPGDVIGIFEGLVKEVKSENELMMILGHELGHFANRDHLRNLGKTLAIRVA IASLFGDNATLANSVGVVIETISNARYSQEQEYQADEFGLILLNKTYGHVTGATDFFKNFKEKENLGWDFFSSHPAGNKR VKRLEKLIKQKQYKLGEYSDLELNLQFSDQEFRKYKQR
Specific function: Seems to regulate the expression of speB [H]
COG id: COG4783
COG function: function code R; Putative Zn-dependent protease, contains TPR repeats
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M48B family [H]
Homologues:
Organism=Escherichia coli, GI87082185, Length=154, Percent_Identity=35.0649350649351, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI87081800, Length=160, Percent_Identity=30, Blast_Score=65, Evalue=5e-12,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001915 [H]
Pfam domain/function: PF01435 Peptidase_M48 [H]
EC number: 3.4.24.- [C]
Molecular weight: Translated: 31995; Mature: 31864
Theoretical pI: Translated: 8.68; Mature: 8.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNRNPSPTNRQLLIILGIWTGIIVIMISLMISFVSLLADWAITHIPISWEQKLGELIVP CCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH VYEQKAKDSPQQEILNNLLDRLESQLNNKLLKNRDYRVIYIPEKNVNAFAIPGDVIGIFE HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEECCHHHHHHHH GLVKEVKSENELMMILGHELGHFANRDHLRNLGKTLAIRVAIASLFGDNATLANSVGVVI HHHHHHCCCCCEEEEECHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH ETISNARYSQEQEYQADEFGLILLNKTYGHVTGATDFFKNFKEKENLGWDFFSSHPAGNK HHHHHCCCCCHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHH RVKRLEKLIKQKQYKLGEYSDLELNLQFSDQEFRKYKQR HHHHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHCC >Mature Secondary Structure SNRNPSPTNRQLLIILGIWTGIIVIMISLMISFVSLLADWAITHIPISWEQKLGELIVP CCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH VYEQKAKDSPQQEILNNLLDRLESQLNNKLLKNRDYRVIYIPEKNVNAFAIPGDVIGIFE HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEECCHHHHHHHH GLVKEVKSENELMMILGHELGHFANRDHLRNLGKTLAIRVAIASLFGDNATLANSVGVVI HHHHHHCCCCCEEEEECHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH ETISNARYSQEQEYQADEFGLILLNKTYGHVTGATDFFKNFKEKENLGWDFFSSHPAGNK HHHHHCCCCCHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHH RVKRLEKLIKQKQYKLGEYSDLELNLQFSDQEFRKYKQR HHHHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: Zn [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2153656; 9278503; 1310091 [H]