| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is 113474373
Identifier: 113474373
GI number: 113474373
Start: 808988
End: 809668
Strand: Direct
Name: 113474373
Synonym: Tery_0506
Alternate gene names: NA
Gene position: 808988-809668 (Clockwise)
Preceding gene: 113474372
Following gene: 113474374
Centisome position: 10.44
GC content: 38.18
Gene sequence:
>681_bases ATGGATATTCAATTAATACATCAACCCGATAATACGATCGCTAAAGTTAGCTTAAATAGAGGAGAAGAAATCGTTGCCCA AGCAGGTTGTATGGTTGCTATGAGTGGGTTTATCAATACTAGTACTACCCTCAGACAAGGAAAAGGAGGGGGAATTATGG GGGGTATAAAACGAATGTTAGGGGGTGAATCTCTATTTTTAAGTGTTTTTCGTTCCCCTAGTCCCGACGGCCAAGTTTTT CTCGCCCCTAAATTAATGGGAGACATCCTAGTTTATGAAATGAAGGGTCAAGAATTAGTTGTCCAAGCATCCTCCTATCT TGCTTCTGATAACAATGTAGATCTTGATTTAGGGTTTCAAGGGATAAAATCTTTATTCTCAGGAGAATCTATTTTTTGGT TAAGTATTACCGGTTATGGCCCAGTAATTTTAACTTCTTTTGGAGGAATTTATGAAATAGATGTTAAGGGTGATTATATT GTGGATACTGGCCATATTGTCGCTTTTGAAAGCAGTTTAGATTTTCGTATTGATAAAGCTAATTCAAGTTGGTTGGGGGC ATTTTTTGGCGGTGAAGGTTTTGTCTGTCGTTTCCAAGGCCGAGGCAAAGTTTATTGTCAAACCCATAATTCAGGGAGTT TTGGATCTCTCATCGGTTCTCAATTGCCTCCTAAAAAATAA
Upstream 100 bases:
>100_bases TCGACTCAAAGGCAATGGTGTTATTTATTTGCAATCTCGTAGTATTGAGGGTTTAGTTCAATTCTTAAAACCCAAAGTCC GTTAAAAAGTTCAAAAAATT
Downstream 100 bases:
>100_bases ATCATTTTTTGAAAATGACTAGGCTCAAAGGAAGGAGAGAGGGAGGTCGTTTCAGTTATAACCTAATCAGTTATCAGTAC CTCAATAGAATATTTTGGCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 226; Mature: 226
Protein sequence:
>226_residues MDIQLIHQPDNTIAKVSLNRGEEIVAQAGCMVAMSGFINTSTTLRQGKGGGIMGGIKRMLGGESLFLSVFRSPSPDGQVF LAPKLMGDILVYEMKGQELVVQASSYLASDNNVDLDLGFQGIKSLFSGESIFWLSITGYGPVILTSFGGIYEIDVKGDYI VDTGHIVAFESSLDFRIDKANSSWLGAFFGGEGFVCRFQGRGKVYCQTHNSGSFGSLIGSQLPPKK
Sequences:
>Translated_226_residues MDIQLIHQPDNTIAKVSLNRGEEIVAQAGCMVAMSGFINTSTTLRQGKGGGIMGGIKRMLGGESLFLSVFRSPSPDGQVF LAPKLMGDILVYEMKGQELVVQASSYLASDNNVDLDLGFQGIKSLFSGESIFWLSITGYGPVILTSFGGIYEIDVKGDYI VDTGHIVAFESSLDFRIDKANSSWLGAFFGGEGFVCRFQGRGKVYCQTHNSGSFGSLIGSQLPPKK >Mature_226_residues MDIQLIHQPDNTIAKVSLNRGEEIVAQAGCMVAMSGFINTSTTLRQGKGGGIMGGIKRMLGGESLFLSVFRSPSPDGQVF LAPKLMGDILVYEMKGQELVVQASSYLASDNNVDLDLGFQGIKSLFSGESIFWLSITGYGPVILTSFGGIYEIDVKGDYI VDTGHIVAFESSLDFRIDKANSSWLGAFFGGEGFVCRFQGRGKVYCQTHNSGSFGSLIGSQLPPKK
Specific function: Unknown
COG id: COG2013
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002838 - InterPro: IPR016031 [H]
Pfam domain/function: PF01987 DUF124 [H]
EC number: NA
Molecular weight: Translated: 24286; Mature: 24286
Theoretical pI: Translated: 5.70; Mature: 5.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDIQLIHQPDNTIAKVSLNRGEEIVAQAGCMVAMSGFINTSTTLRQGKGGGIMGGIKRML CCEEEEECCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCEEECCCCCCHHHHHHHHH GGESLFLSVFRSPSPDGQVFLAPKLMGDILVYEMKGQELVVQASSYLASDNNVDLDLGFQ CCCEEEEEEECCCCCCCCEEECHHHCCCEEEEEECCCEEEEEEHHHCCCCCCEEEEECHH GIKSLFSGESIFWLSITGYGPVILTSFGGIYEIDVKGDYIVDTGHIVAFESSLDFRIDKA HHHHHHCCCEEEEEEECCCCCEEEECCCCEEEEEECCCEEEECCEEEEEECCCCEEEECC NSSWLGAFFGGEGFVCRFQGRGKVYCQTHNSGSFGSLIGSQLPPKK CCCEEEEEECCCEEEEEECCCCEEEEEECCCCCHHHHHCCCCCCCC >Mature Secondary Structure MDIQLIHQPDNTIAKVSLNRGEEIVAQAGCMVAMSGFINTSTTLRQGKGGGIMGGIKRML CCEEEEECCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCEEECCCCCCHHHHHHHHH GGESLFLSVFRSPSPDGQVFLAPKLMGDILVYEMKGQELVVQASSYLASDNNVDLDLGFQ CCCEEEEEEECCCCCCCCEEECHHHCCCEEEEEECCCEEEEEEHHHCCCCCCEEEEECHH GIKSLFSGESIFWLSITGYGPVILTSFGGIYEIDVKGDYIVDTGHIVAFESSLDFRIDKA HHHHHHCCCEEEEEEECCCCCEEEECCCCEEEEEECCCEEEECCEEEEEECCCCEEEECC NSSWLGAFFGGEGFVCRFQGRGKVYCQTHNSGSFGSLIGSQLPPKK CCCEEEEEECCCEEEEEECCCCEEEEEECCCCCHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA