| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474364
Identifier: 113474364
GI number: 113474364
Start: 796283
End: 797596
Strand: Direct
Name: 113474364
Synonym: Tery_0496
Alternate gene names: NA
Gene position: 796283-797596 (Clockwise)
Preceding gene: 113474362
Following gene: 113474365
Centisome position: 10.27
GC content: 29.0
Gene sequence:
>1314_bases ATGAAAAACTTTATAGATAGAAATGAACAAGAAAAATCCCAGTATCAACAGTATATCTATAACCATTTTCTCCAGTTGAT AGATATAGAATCATCAGAAGAGATAATTAAAAGGTTTAGAATTTTATTTATTAATTGTTCTGAATATCCTGATAGAAAAG TATCTAGAGCACTAGAAATAATTATCGCATTATTGGAAGATAAAGAAGAATTTAATTTTTTCTTAAATCGTTGTTTTCAT ATAGTTATTAATAGAAAGCAACCTTATAACTATAAAAAAGATGTGTTGCTAGACTTAATTAAAATTTTTGATAGCATTAA CAATAAACCAATACACCGCCACTACGGTTCTCGTAGTAGTCAGAAACTGTTAGACGTGGTTCGAGCATTTACAAAAAGTG AACAGTATTTTAGTTTAAAACGTTTAGCAGAAGTAATAAACCAAGAAGTAATAAGTTATAGAAACAATGATAGTGCTTTA GTTGAACCTTTGAGAACTTTAATTCCACGTTATCCTTACTTATATCAACATTGTTTAATTACCTTAGACAATAGCTATGA ACATCAGGAAGCTATCAAGAAGATGCAACGACAAAAACAAAAAAAATTTGAAATAGATTTATCCCACTACATAACTCATC AAATTAGACATGGGGTAACAACTACTTCAAATTTTCAAAGTTCAAGTTTTACAGAGTCTAGTTGGGAAAACACGAATAAA ATTAAAAATCCTACTCTTTTGAATGACCGGGAATTATTATCAGCTACTAGACAATTTGTAGGTAAAGTTGAAAATGGCAA GAGCTACCAAGACTATGCCAAAAGTTTTCTAATTTATACCAAACAACCTCAATCCTATAGTAGCTTTAAAAAAATCTTCT ACCAATACTTAAGCACATCCTTTAATGTAGGCTCTAGGTATGTTAAGGATCATTTCAAGAGAGAACTATATAATCAACTC AAAAATACTATGTCTCACAATGATAATAAAAAATTAAATGACTTTTTAGTGATGAGAACCTGTAATAAAATATTAGGATT TTTAGTGGTAGAAAGCACTAAAAAACCAGAGCACTTTTTCTTTGATAACCTGATATCTAATATAGGTTCAATAGCAACTA CTAGCCTTCTTCTCAAAATAGTTTTAGTTTGCTATAAAGTCAAATCATACTTAGAAAAGCGATTTGCAATACTCTTTAAC CATTATGAAAGAAGCACAAGAGAATCAGTTAAGTGGTTAGTAAAGGTATTAGAAAATCTACAAGTTGCATTCAGTACCAA CTTTGGAAAAGTTGATTTATCTTTTATTTGTTAG
Upstream 100 bases:
>100_bases GTGTAGCCATACTTAAGAAAATTGGAGTTATTAAATTGCATAATTATATTATTTATCAGGGTACTATGATCTAAAAAAAA TCAATTAGGAAATATATCAA
Downstream 100 bases:
>100_bases AAGATTTAAAACCTTTATGACACACTCCCAATTCCCAATTAAATTTGAAGGTGCTCTAGTGGAATAGCACAAAATCACTG AAGTTTTCAAGTATCAAGGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 437; Mature: 437
Protein sequence:
>437_residues MKNFIDRNEQEKSQYQQYIYNHFLQLIDIESSEEIIKRFRILFINCSEYPDRKVSRALEIIIALLEDKEEFNFFLNRCFH IVINRKQPYNYKKDVLLDLIKIFDSINNKPIHRHYGSRSSQKLLDVVRAFTKSEQYFSLKRLAEVINQEVISYRNNDSAL VEPLRTLIPRYPYLYQHCLITLDNSYEHQEAIKKMQRQKQKKFEIDLSHYITHQIRHGVTTTSNFQSSSFTESSWENTNK IKNPTLLNDRELLSATRQFVGKVENGKSYQDYAKSFLIYTKQPQSYSSFKKIFYQYLSTSFNVGSRYVKDHFKRELYNQL KNTMSHNDNKKLNDFLVMRTCNKILGFLVVESTKKPEHFFFDNLISNIGSIATTSLLLKIVLVCYKVKSYLEKRFAILFN HYERSTRESVKWLVKVLENLQVAFSTNFGKVDLSFIC
Sequences:
>Translated_437_residues MKNFIDRNEQEKSQYQQYIYNHFLQLIDIESSEEIIKRFRILFINCSEYPDRKVSRALEIIIALLEDKEEFNFFLNRCFH IVINRKQPYNYKKDVLLDLIKIFDSINNKPIHRHYGSRSSQKLLDVVRAFTKSEQYFSLKRLAEVINQEVISYRNNDSAL VEPLRTLIPRYPYLYQHCLITLDNSYEHQEAIKKMQRQKQKKFEIDLSHYITHQIRHGVTTTSNFQSSSFTESSWENTNK IKNPTLLNDRELLSATRQFVGKVENGKSYQDYAKSFLIYTKQPQSYSSFKKIFYQYLSTSFNVGSRYVKDHFKRELYNQL KNTMSHNDNKKLNDFLVMRTCNKILGFLVVESTKKPEHFFFDNLISNIGSIATTSLLLKIVLVCYKVKSYLEKRFAILFN HYERSTRESVKWLVKVLENLQVAFSTNFGKVDLSFIC >Mature_437_residues MKNFIDRNEQEKSQYQQYIYNHFLQLIDIESSEEIIKRFRILFINCSEYPDRKVSRALEIIIALLEDKEEFNFFLNRCFH IVINRKQPYNYKKDVLLDLIKIFDSINNKPIHRHYGSRSSQKLLDVVRAFTKSEQYFSLKRLAEVINQEVISYRNNDSAL VEPLRTLIPRYPYLYQHCLITLDNSYEHQEAIKKMQRQKQKKFEIDLSHYITHQIRHGVTTTSNFQSSSFTESSWENTNK IKNPTLLNDRELLSATRQFVGKVENGKSYQDYAKSFLIYTKQPQSYSSFKKIFYQYLSTSFNVGSRYVKDHFKRELYNQL KNTMSHNDNKKLNDFLVMRTCNKILGFLVVESTKKPEHFFFDNLISNIGSIATTSLLLKIVLVCYKVKSYLEKRFAILFN HYERSTRESVKWLVKVLENLQVAFSTNFGKVDLSFIC
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52037; Mature: 52037
Theoretical pI: Translated: 9.81; Mature: 9.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNFIDRNEQEKSQYQQYIYNHFLQLIDIESSEEIIKRFRILFINCSEYPDRKVSRALEI CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEECCCCCCHHHHHHHHH IIALLEDKEEFNFFLNRCFHIVINRKQPYNYKKDVLLDLIKIFDSINNKPIHRHYGSRSS HHHHHHCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCCHH QKLLDVVRAFTKSEQYFSLKRLAEVINQEVISYRNNDSALVEPLRTLIPRYPYLYQHCLI HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHH TLDNSYEHQEAIKKMQRQKQKKFEIDLSHYITHQIRHGVTTTSNFQSSSFTESSWENTNK HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC IKNPTLLNDRELLSATRQFVGKVENGKSYQDYAKSFLIYTKQPQSYSSFKKIFYQYLSTS CCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHH FNVGSRYVKDHFKRELYNQLKNTMSHNDNKKLNDFLVMRTCNKILGFLVVESTKKPEHFF HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH FDNLISNIGSIATTSLLLKIVLVCYKVKSYLEKRFAILFNHYERSTRESVKWLVKVLENL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QVAFSTNFGKVDLSFIC HHHHCCCCCCEEEEEEC >Mature Secondary Structure MKNFIDRNEQEKSQYQQYIYNHFLQLIDIESSEEIIKRFRILFINCSEYPDRKVSRALEI CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEECCCCCCHHHHHHHHH IIALLEDKEEFNFFLNRCFHIVINRKQPYNYKKDVLLDLIKIFDSINNKPIHRHYGSRSS HHHHHHCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCCHH QKLLDVVRAFTKSEQYFSLKRLAEVINQEVISYRNNDSALVEPLRTLIPRYPYLYQHCLI HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHH TLDNSYEHQEAIKKMQRQKQKKFEIDLSHYITHQIRHGVTTTSNFQSSSFTESSWENTNK HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC IKNPTLLNDRELLSATRQFVGKVENGKSYQDYAKSFLIYTKQPQSYSSFKKIFYQYLSTS CCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHH FNVGSRYVKDHFKRELYNQLKNTMSHNDNKKLNDFLVMRTCNKILGFLVVESTKKPEHFF HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH FDNLISNIGSIATTSLLLKIVLVCYKVKSYLEKRFAILFNHYERSTRESVKWLVKVLENL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QVAFSTNFGKVDLSFIC HHHHCCCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7894708; 8905231 [H]