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The map label for this gene is ykfC [H]

Identifier: 113474298

GI number: 113474298

Start: 675849

End: 677618

Strand: Reverse

Name: ykfC [H]

Synonym: Tery_0426

Alternate gene names: 113474298

Gene position: 677618-675849 (Counterclockwise)

Preceding gene: 113474300

Following gene: 113474297

Centisome position: 8.74

GC content: 40.51

Gene sequence:

>1770_bases
ATGGAAAAGGCTAAAACACTAAAAAGAAGAATGGACAAGCCAGAATCCTTTTTAAGCGTGGCATGGGATACAGACGATAT
ACCGGATAAAATTTGTGTTAATCCTAATCTGAAATGGAGAGACATAGATTGGAAAAAGGTTGAGAAGAATGTATTTAAGT
TGCAAAAGTTAATTTACAGAGCATCCAGCCGTGGTGAGATCCGCAAGATGCGCAAATATCAAAAACTTCTGATCAAAAGT
CATGACGCCTTGTTGCTAGCTGTTAGAAATGTGACCCAGGACAACCAGGGCAAGAAAACTGCTGGGATAGATGGGATCAA
AAATCTACCTCCAATGCAGCGACTCCACTTGGTGGATTTGTTAAAATCACGTGACCTTAAAGCTAGCCCAACTCAGAAGG
TCTCAATACCAAAAACTGGTAGAAACCAGAAGCGCCGGTTAGGCATTCACTCGCTGTACGACTTGGGACTGCAAACTTTA
GTTAAGTTGGGCATGGAACCAGAATGGGAGGCTCACTTTGAAACTAATACCTATGGTTTTAGGCCGGGTCGGTCAACAGA
TGACGCTATTCAGGCGATTTACCTCAGTATCAACGACGAACCAAAATATGTACTGAATGCTGACATATCCAAATGTATGA
GCGAAGTTAACCATCATGCACTGCTAGGAAAAATAGATAAATCTCCCTATAGACAATTAGTCAAACAGTGGCTAAAGTCT
GGAGTATTTGACAAGAGTCAATTCGATCCACCTCTCTTGGAGTTAGGTACACCACAAGGAGAGGTAATTAGTCCCCTGCT
AGCAAATATCGCTCTACACGGTATGGAAAAATGCCTACAAGACTTTGCTGAAACACTACCAGGAAATAAAAGGGATAATA
TACAAGCATTATCTTTAGTAAGATATGCCGGTAACTTTGTAATATTACACAAAGATATTGAGGTAGTAATGCAGGCAAAA
GCTGTGGTACAGGAATGGTTAAATAACATAGGATTGGAACTGAAACCGGAAAAAACCAGAATTGCTCACACACTAGAAGA
ATATGAAGGGAACCAGCCCGGATTTGACTTTCTAGGATTCACAGTTAGGCAGTGGAAGGTAAAAACAAGCAAGCAAGGGT
TCAAAACGCTGATCAAACCATCCAAACAGAGTATTAATACTCATTATCGGAAAATGGCAGAGGTATGTGATACTCATAAA
AGTGCTACTGTCAAGGTATTGATAACTAAGTTAAACCCGATAATAAGAGAATGGGCTAACTACTTTTCAGCGGTAGTCAG
TAATGACATATTTCAAAAGCTAGACCATCTCTTATTGAGGAGAATATGGCGATGGGCAAGCCGGAGACATTCTAATAAGT
CAGCAGCCTGGGTGAAAGAGAAGTACTTTCCTCACAGAGAAGGAACCAAAAGTTGGGTACTTAAGGATGAGGAATATATA
CTAAATCTACACTCTGATGTGTCTATTATAAGACACGTTAAAGTTAAGGATAATAAATCGCCCTACGATGGTGACTGGAT
TTATTGGAGTAGTAGAATGGTTAACAGTCCAGGCATAAGGAAAGAAGTTTCGACTCTGTTGAAAAAGCAGAAAGGTAAAT
GCGCATTTTGTGGGCTAAGTTTCAGACCAACGGATACTATGGAGGTTTACCATGTCATTCCGAGGTCTGAAAAGGGTAAT
AGCACAAGCAAGAACAAAGAGTTATTACATCGACACTGCCACGATACTAAAACTGCACTAGAGAGGGAGACATCCCAGTC
GGAAGATTGA

Upstream 100 bases:

>100_bases
TGCACAAAGGTTGCAGGTCTTAAGGAGAGTAGGATTGGGTAAGAAGCATAATCATGCAGACGTACCCACTGTTAGACGTA
ATGTAAGGTAATAATTAGTA

Downstream 100 bases:

>100_bases
ATAAAGCTCCTGAAATACCAGAAGGATACCAATGGGTAGACAATATGGTAACTCTATAAAGCAGGGATGTACCTTTGAAT
TGGGGCGTCTAAGAGAGAAG

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 589; Mature: 589

Protein sequence:

>589_residues
MEKAKTLKRRMDKPESFLSVAWDTDDIPDKICVNPNLKWRDIDWKKVEKNVFKLQKLIYRASSRGEIRKMRKYQKLLIKS
HDALLLAVRNVTQDNQGKKTAGIDGIKNLPPMQRLHLVDLLKSRDLKASPTQKVSIPKTGRNQKRRLGIHSLYDLGLQTL
VKLGMEPEWEAHFETNTYGFRPGRSTDDAIQAIYLSINDEPKYVLNADISKCMSEVNHHALLGKIDKSPYRQLVKQWLKS
GVFDKSQFDPPLLELGTPQGEVISPLLANIALHGMEKCLQDFAETLPGNKRDNIQALSLVRYAGNFVILHKDIEVVMQAK
AVVQEWLNNIGLELKPEKTRIAHTLEEYEGNQPGFDFLGFTVRQWKVKTSKQGFKTLIKPSKQSINTHYRKMAEVCDTHK
SATVKVLITKLNPIIREWANYFSAVVSNDIFQKLDHLLLRRIWRWASRRHSNKSAAWVKEKYFPHREGTKSWVLKDEEYI
LNLHSDVSIIRHVKVKDNKSPYDGDWIYWSSRMVNSPGIRKEVSTLLKKQKGKCAFCGLSFRPTDTMEVYHVIPRSEKGN
STSKNKELLHRHCHDTKTALERETSQSED

Sequences:

>Translated_589_residues
MEKAKTLKRRMDKPESFLSVAWDTDDIPDKICVNPNLKWRDIDWKKVEKNVFKLQKLIYRASSRGEIRKMRKYQKLLIKS
HDALLLAVRNVTQDNQGKKTAGIDGIKNLPPMQRLHLVDLLKSRDLKASPTQKVSIPKTGRNQKRRLGIHSLYDLGLQTL
VKLGMEPEWEAHFETNTYGFRPGRSTDDAIQAIYLSINDEPKYVLNADISKCMSEVNHHALLGKIDKSPYRQLVKQWLKS
GVFDKSQFDPPLLELGTPQGEVISPLLANIALHGMEKCLQDFAETLPGNKRDNIQALSLVRYAGNFVILHKDIEVVMQAK
AVVQEWLNNIGLELKPEKTRIAHTLEEYEGNQPGFDFLGFTVRQWKVKTSKQGFKTLIKPSKQSINTHYRKMAEVCDTHK
SATVKVLITKLNPIIREWANYFSAVVSNDIFQKLDHLLLRRIWRWASRRHSNKSAAWVKEKYFPHREGTKSWVLKDEEYI
LNLHSDVSIIRHVKVKDNKSPYDGDWIYWSSRMVNSPGIRKEVSTLLKKQKGKCAFCGLSFRPTDTMEVYHVIPRSEKGN
STSKNKELLHRHCHDTKTALERETSQSED
>Mature_589_residues
MEKAKTLKRRMDKPESFLSVAWDTDDIPDKICVNPNLKWRDIDWKKVEKNVFKLQKLIYRASSRGEIRKMRKYQKLLIKS
HDALLLAVRNVTQDNQGKKTAGIDGIKNLPPMQRLHLVDLLKSRDLKASPTQKVSIPKTGRNQKRRLGIHSLYDLGLQTL
VKLGMEPEWEAHFETNTYGFRPGRSTDDAIQAIYLSINDEPKYVLNADISKCMSEVNHHALLGKIDKSPYRQLVKQWLKS
GVFDKSQFDPPLLELGTPQGEVISPLLANIALHGMEKCLQDFAETLPGNKRDNIQALSLVRYAGNFVILHKDIEVVMQAK
AVVQEWLNNIGLELKPEKTRIAHTLEEYEGNQPGFDFLGFTVRQWKVKTSKQGFKTLIKPSKQSINTHYRKMAEVCDTHK
SATVKVLITKLNPIIREWANYFSAVVSNDIFQKLDHLLLRRIWRWASRRHSNKSAAWVKEKYFPHREGTKSWVLKDEEYI
LNLHSDVSIIRHVKVKDNKSPYDGDWIYWSSRMVNSPGIRKEVSTLLKKQKGKCAFCGLSFRPTDTMEVYHVIPRSEKGN
STSKNKELLHRHCHDTKTALERETSQSED

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226520, Length=214, Percent_Identity=26.1682242990654, Blast_Score=69, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6226521, Length=210, Percent_Identity=26.6666666666667, Blast_Score=67, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 68040; Mature: 68040

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKAKTLKRRMDKPESFLSVAWDTDDIPDKICVNPNLKWRDIDWKKVEKNVFKLQKLIYR
CCHHHHHHHHCCCCHHHHEEECCCCCCCCCEEECCCCEECCCCHHHHHHHHHHHHHHHHH
ASSRGEIRKMRKYQKLLIKSHDALLLAVRNVTQDNQGKKTAGIDGIKNLPPMQRLHLVDL
HCCCHHHHHHHHHHHHHHHCCCHHEEEEHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
LKSRDLKASPTQKVSIPKTGRNQKRRLGIHSLYDLGLQTLVKLGMEPEWEAHFETNTYGF
HHCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
RPGRSTDDAIQAIYLSINDEPKYVLNADISKCMSEVNHHALLGKIDKSPYRQLVKQWLKS
CCCCCCHHHEEEEEEEECCCCCEEECHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
GVFDKSQFDPPLLELGTPQGEVISPLLANIALHGMEKCLQDFAETLPGNKRDNIQALSLV
CCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
RYAGNFVILHKDIEVVMQAKAVVQEWLNNIGLELKPEKTRIAHTLEEYEGNQPGFDFLGF
HHHCCEEEEECHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHCCCCCCCHHHHH
TVRQWKVKTSKQGFKTLIKPSKQSINTHYRKMAEVCDTHKSATVKVLITKLNPIIREWAN
HHHHEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH
YFSAVVSNDIFQKLDHLLLRRIWRWASRRHSNKSAAWVKEKYFPHREGTKSWVLKDEEYI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCEEECCHHHH
LNLHSDVSIIRHVKVKDNKSPYDGDWIYWSSRMVNSPGIRKEVSTLLKKQKGKCAFCGLS
EECCCCHHHHHEEEECCCCCCCCCCEEEEECEECCCCCHHHHHHHHHHHCCCCEEEECCC
FRPTDTMEVYHVIPRSEKGNSTSKNKELLHRHCHDTKTALERETSQSED
CCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MEKAKTLKRRMDKPESFLSVAWDTDDIPDKICVNPNLKWRDIDWKKVEKNVFKLQKLIYR
CCHHHHHHHHCCCCHHHHEEECCCCCCCCCEEECCCCEECCCCHHHHHHHHHHHHHHHHH
ASSRGEIRKMRKYQKLLIKSHDALLLAVRNVTQDNQGKKTAGIDGIKNLPPMQRLHLVDL
HCCCHHHHHHHHHHHHHHHCCCHHEEEEHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
LKSRDLKASPTQKVSIPKTGRNQKRRLGIHSLYDLGLQTLVKLGMEPEWEAHFETNTYGF
HHCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
RPGRSTDDAIQAIYLSINDEPKYVLNADISKCMSEVNHHALLGKIDKSPYRQLVKQWLKS
CCCCCCHHHEEEEEEEECCCCCEEECHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
GVFDKSQFDPPLLELGTPQGEVISPLLANIALHGMEKCLQDFAETLPGNKRDNIQALSLV
CCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
RYAGNFVILHKDIEVVMQAKAVVQEWLNNIGLELKPEKTRIAHTLEEYEGNQPGFDFLGF
HHHCCEEEEECHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHCCCCCCCHHHHH
TVRQWKVKTSKQGFKTLIKPSKQSINTHYRKMAEVCDTHKSATVKVLITKLNPIIREWAN
HHHHEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH
YFSAVVSNDIFQKLDHLLLRRIWRWASRRHSNKSAAWVKEKYFPHREGTKSWVLKDEEYI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCEEECCHHHH
LNLHSDVSIIRHVKVKDNKSPYDGDWIYWSSRMVNSPGIRKEVSTLLKKQKGKCAFCGLS
EECCCCHHHHHEEEECCCCCCCCCCEEEEECEECCCCCHHHHHHHHHHHCCCCEEEECCC
FRPTDTMEVYHVIPRSEKGNSTSKNKELLHRHCHDTKTALERETSQSED
CCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]