| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is pncB2 [H]
Identifier: 113474205
GI number: 113474205
Start: 492550
End: 493929
Strand: Direct
Name: pncB2 [H]
Synonym: Tery_0318
Alternate gene names: 113474205
Gene position: 492550-493929 (Clockwise)
Preceding gene: 113474200
Following gene: 113474206
Centisome position: 6.36
GC content: 38.84
Gene sequence:
>1380_bases ATGGTACAAGAATATCTAGAACTTTCTCTATCTCCAGAAGATTACACCTTGTTAACAGACCTCTATCAATTAACAATGAT AGCTTGCTATGTTGGAGAAAAAATAGACCAACGACAAGCTAGTTTTGAGCTATTTGTGCGAAAACTACCTACAGGTTTTG GCTATCTCATTGCTATGGGTTTAGCACAAGCATTAGACTATCTCGAGAAATTTAGATTTAGCTCTGAGCAAATTGACGCC TTAAAGTCAACGGGAATTTTTGCTAATGCCCCTAGTGAATTTTGGTCCTTACTAGCAGAAGCTAAATTCACTGGAAATGT ATGGGCGGTGAAAGAGGGAACAGCCATTTTTCCAAATCAACCCCTACTGCGGATAGAAGCACCGCTTTGGCAAGGGCAGT TGGTAGAAACATATCTACTAAATACAATGAATTACCAAACCCTGATAGCAACAAAAGCAGCGAGAATGCGGGATATTGCT GGAAATAGCACCAAATTACTAGAATTTGGCACAAGACGTGCATTTAGTCCCCAAGCTAGTGTTTTGGCTGCTCGTGCTGC TTTGGCAGGAGGAATGGATGCTACTTCTAATGTTTTGGCAGCCTTGAAATTAGGTCGGAAACCAGTAGGAACGATGGCTC ACTCTTTGGTGATGGCAATATCTGCAGTGGAAGGTAGTGAGGAGGATGCTTTTAAAAGTTTTCAGCGATATTTCCCTACA GCCACTTTATTGATAGATACTTATGATACTTTATCAGCTACTCGTTTATTGGCACGACGAGTTAAACAGGGTGAAATGCA GATAAGTGGGGTCAGGTTAGATTCTGGAAATTTGGTTGAATTGTCCCAGAAGGTGCGATCGCTACTGCCAAAAGTGAGGA TTTTTGCTAGTGGAGATATAGATGAGTGGGAAATAGCTAGACTTCAGAAGGAAAATGCTTGTATTGATGGATATGGTATT GGTACTAAGTTGGTAACTGGTGTTCCTGTGAATGGAGTTTATAAACTGGTAGAAATAGATGGTATTCCTGCGATGAAAAA TACTACTGGAAAAGTTAGTTATCCTGGTCGAAAACAAATATATAGATATTTGGAAAATGGTCAATTGAAACAAGATTATT TGGGGTTAATGGCTGAAGATGTATTGAGTCAAACAGAACCTCATACTGATTCTTTTGTAAAATTAATGATACAAGTAGTT AAAAATGGGGAGATGCTGCAAACATCAGAAAGTCTAGAAGCGATCGCTAAACGTACTGCTATTTCTGTTGCTAGTTTGCC ACCTGAAACTCGTAGTTTAGAAAATCCTATTTTGCCACCAATGAAAATTTCTCATAAATTACAACAACTTACACAAAAAA CTCAAGCTAACAGCTCTTAA
Upstream 100 bases:
>100_bases AACTCAAGTAAAATAGCAAACGAGCCCAAAATTATAAATTGTGCGTTTTTCAGACTTTAACTAAAATACTGCGGGTTTCC TAACTACCAAGAATTTTTAA
Downstream 100 bases:
>100_bases AAATTAAGCATTGCATATTTATGGGATGAATGATACGTTAAGAGAGAGAATAAAAGGAAAAAAGTATAAGATGCCCGTAT GGCTTGTAGTTTTGGGGTTT
Product: nicotinate phosphoribosyltransferase
Products: NA
Alternate protein names: NAPRTase pncB2 [H]
Number of amino acids: Translated: 459; Mature: 459
Protein sequence:
>459_residues MVQEYLELSLSPEDYTLLTDLYQLTMIACYVGEKIDQRQASFELFVRKLPTGFGYLIAMGLAQALDYLEKFRFSSEQIDA LKSTGIFANAPSEFWSLLAEAKFTGNVWAVKEGTAIFPNQPLLRIEAPLWQGQLVETYLLNTMNYQTLIATKAARMRDIA GNSTKLLEFGTRRAFSPQASVLAARAALAGGMDATSNVLAALKLGRKPVGTMAHSLVMAISAVEGSEEDAFKSFQRYFPT ATLLIDTYDTLSATRLLARRVKQGEMQISGVRLDSGNLVELSQKVRSLLPKVRIFASGDIDEWEIARLQKENACIDGYGI GTKLVTGVPVNGVYKLVEIDGIPAMKNTTGKVSYPGRKQIYRYLENGQLKQDYLGLMAEDVLSQTEPHTDSFVKLMIQVV KNGEMLQTSESLEAIAKRTAISVASLPPETRSLENPILPPMKISHKLQQLTQKTQANSS
Sequences:
>Translated_459_residues MVQEYLELSLSPEDYTLLTDLYQLTMIACYVGEKIDQRQASFELFVRKLPTGFGYLIAMGLAQALDYLEKFRFSSEQIDA LKSTGIFANAPSEFWSLLAEAKFTGNVWAVKEGTAIFPNQPLLRIEAPLWQGQLVETYLLNTMNYQTLIATKAARMRDIA GNSTKLLEFGTRRAFSPQASVLAARAALAGGMDATSNVLAALKLGRKPVGTMAHSLVMAISAVEGSEEDAFKSFQRYFPT ATLLIDTYDTLSATRLLARRVKQGEMQISGVRLDSGNLVELSQKVRSLLPKVRIFASGDIDEWEIARLQKENACIDGYGI GTKLVTGVPVNGVYKLVEIDGIPAMKNTTGKVSYPGRKQIYRYLENGQLKQDYLGLMAEDVLSQTEPHTDSFVKLMIQVV KNGEMLQTSESLEAIAKRTAISVASLPPETRSLENPILPPMKISHKLQQLTQKTQANSS >Mature_459_residues MVQEYLELSLSPEDYTLLTDLYQLTMIACYVGEKIDQRQASFELFVRKLPTGFGYLIAMGLAQALDYLEKFRFSSEQIDA LKSTGIFANAPSEFWSLLAEAKFTGNVWAVKEGTAIFPNQPLLRIEAPLWQGQLVETYLLNTMNYQTLIATKAARMRDIA GNSTKLLEFGTRRAFSPQASVLAARAALAGGMDATSNVLAALKLGRKPVGTMAHSLVMAISAVEGSEEDAFKSFQRYFPT ATLLIDTYDTLSATRLLARRVKQGEMQISGVRLDSGNLVELSQKVRSLLPKVRIFASGDIDEWEIARLQKENACIDGYGI GTKLVTGVPVNGVYKLVEIDGIPAMKNTTGKVSYPGRKQIYRYLENGQLKQDYLGLMAEDVLSQTEPHTDSFVKLMIQVV KNGEMLQTSESLEAIAKRTAISVASLPPETRSLENPILPPMKISHKLQQLTQKTQANSS
Specific function: Catalyzes the conversion of nicotinic acid (NA) to NA mononucleotide (NaMN) [H]
COG id: COG1488
COG function: function code H; Nicotinic acid phosphoribosyltransferase
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the NAPRTase family [H]
Homologues:
Organism=Homo sapiens, GI194394158, Length=527, Percent_Identity=32.8273244781784, Blast_Score=194, Evalue=2e-49, Organism=Caenorhabditis elegans, GI71997947, Length=524, Percent_Identity=31.6793893129771, Blast_Score=198, Evalue=6e-51, Organism=Caenorhabditis elegans, GI71997952, Length=524, Percent_Identity=31.6793893129771, Blast_Score=198, Evalue=6e-51, Organism=Caenorhabditis elegans, GI71997955, Length=207, Percent_Identity=41.0628019323672, Blast_Score=148, Evalue=5e-36, Organism=Saccharomyces cerevisiae, GI6324783, Length=384, Percent_Identity=25.2604166666667, Blast_Score=73, Evalue=9e-14, Organism=Drosophila melanogaster, GI24581587, Length=512, Percent_Identity=33.203125, Blast_Score=186, Evalue=2e-47, Organism=Drosophila melanogaster, GI161076680, Length=209, Percent_Identity=41.6267942583732, Blast_Score=135, Evalue=6e-32, Organism=Drosophila melanogaster, GI24581595, Length=209, Percent_Identity=41.6267942583732, Blast_Score=135, Evalue=6e-32, Organism=Drosophila melanogaster, GI28574709, Length=209, Percent_Identity=41.6267942583732, Blast_Score=135, Evalue=6e-32, Organism=Drosophila melanogaster, GI24581593, Length=209, Percent_Identity=41.6267942583732, Blast_Score=135, Evalue=6e-32, Organism=Drosophila melanogaster, GI24581591, Length=209, Percent_Identity=41.6267942583732, Blast_Score=135, Evalue=6e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015977 - InterPro: IPR007229 - InterPro: IPR006405 - InterPro: IPR002638 [H]
Pfam domain/function: PF04095 NAPRTase [H]
EC number: =2.4.2.11 [H]
Molecular weight: Translated: 50716; Mature: 50716
Theoretical pI: Translated: 8.12; Mature: 8.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVQEYLELSLSPEDYTLLTDLYQLTMIACYVGEKIDQRQASFELFVRKLPTGFGYLIAMG CCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH LAQALDYLEKFRFSSEQIDALKSTGIFANAPSEFWSLLAEAKFTGNVWAVKEGTAIFPNQ HHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCEECCCC PLLRIEAPLWQGQLVETYLLNTMNYQTLIATKAARMRDIAGNSTKLLEFGTRRAFSPQAS CCEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHH VLAARAALAGGMDATSNVLAALKLGRKPVGTMAHSLVMAISAVEGSEEDAFKSFQRYFPT HHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC ATLLIDTYDTLSATRLLARRVKQGEMQISGVRLDSGNLVELSQKVRSLLPKVRIFASGDI EEEEEECHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCC DEWEIARLQKENACIDGYGIGTKLVTGVPVNGVYKLVEIDGIPAMKNTTGKVSYPGRKQI CHHHHHHHHHCCCCCCCCCCCHHHEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHH YRYLENGQLKQDYLGLMAEDVLSQTEPHTDSFVKLMIQVVKNGEMLQTSESLEAIAKRTA HHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHH ISVASLPPETRSLENPILPPMKISHKLQQLTQKTQANSS HHHHCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MVQEYLELSLSPEDYTLLTDLYQLTMIACYVGEKIDQRQASFELFVRKLPTGFGYLIAMG CCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH LAQALDYLEKFRFSSEQIDALKSTGIFANAPSEFWSLLAEAKFTGNVWAVKEGTAIFPNQ HHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCEECCCC PLLRIEAPLWQGQLVETYLLNTMNYQTLIATKAARMRDIAGNSTKLLEFGTRRAFSPQAS CCEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHH VLAARAALAGGMDATSNVLAALKLGRKPVGTMAHSLVMAISAVEGSEEDAFKSFQRYFPT HHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC ATLLIDTYDTLSATRLLARRVKQGEMQISGVRLDSGNLVELSQKVRSLLPKVRIFASGDI EEEEEECHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCC DEWEIARLQKENACIDGYGIGTKLVTGVPVNGVYKLVEIDGIPAMKNTTGKVSYPGRKQI CHHHHHHHHHCCCCCCCCCCCHHHEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHH YRYLENGQLKQDYLGLMAEDVLSQTEPHTDSFVKLMIQVVKNGEMLQTSESLEAIAKRTA HHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHH ISVASLPPETRSLENPILPPMKISHKLQQLTQKTQANSS HHHHCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]