| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is mtdA [H]
Identifier: 110835492
GI number: 110835492
Start: 2979343
End: 2980416
Strand: Reverse
Name: mtdA [H]
Synonym: ABO_2631
Alternate gene names: 110835492
Gene position: 2980416-2979343 (Counterclockwise)
Preceding gene: 110835493
Following gene: 110835491
Centisome position: 95.52
GC content: 57.08
Gene sequence:
>1074_bases ATGCAACGTTTTTGGGTAACCCTGGGCCTAGCACTGGCCTTGTGGGGCTGTGGAGAAGAGCCCCAGGCCGAGGCTCCCAT GCCACAACCGGTGAAGCTGCAGACCGTCAATGGCGGCGATGGCACCTTGCGTCATTATCCAGGCAAGGTGGTGGCCACCG AAGGGTCAGAGTTGGCTTTTCGGGTGTCCGGCCAGCTTGAGCGTCTTCCTGTGCGGGCCGGCGAGCAGGTTAAGAAAGGG CAATTGCTGGCAGCGCTTGATCCGTCGGACTTTAAAAATCAGTTAGCCGATCGGCAAGCCCAGCATGATTTGGCCGAGAG CCAGTATCAACGTGGTATCAGCCTGCGTGAGCGGGGCGTTATTTCTGAAGCTCAGTTCGATGAAATTGAAGCGAAGCGCC GCCAAGCCCAGGCGGCTCTAAGCTTGGCCCGGGACAATGTGAACTACACTCGTCTGAAAGCGCCCTATGGCGGTACGGTG GCACGCACCGAAGTGGAGAATTATCAATTCGTACAGGCCAAGCAGCCGATCCTCTACTTGCAGGGCGATAAAAATATCGA TATCGAGTTCGCTGTTTCTGAGCGGTTTTTTACTAACGTACGCAAATTTTTTACCAAGATGCGTGAAGATTATCAGCCGA GTGTGCGTTTCAAGGGGGCCCCGGATACCACTTTCAAAGCCCGATACAAAGAGCATGAGGCTAGTGCCGGGGATCGCACC CAGACTTATATCATCACCCTGACGATGCCTAACCCGGAAGGCATCATGGTGCTGCCGGGAATGAGTGTGGATGTGGAGAT TGATCTTAGCCAGATCATGCCGGGTACCGAGAAGGTGCCGGTAGTGCCGGCCGCGGCGGTATTCAACCCTGACGGCAAGG AAGGCGCCCATGTGTGGAAGCATCAAGATGACGACACGGTGACGGCCGTGCCGGTCACCCTGGGTGAAGTTGTGGGCGGC GGCGTCCAGATCACCGATGGGTTGCAGCCCGGAGATCGCATTGTGGCGGCCGGGGTTCATCGCCTGAAAGAAGGGCAGGC GGTTCGTGAACTGGTGAAGGAACGGGGCCTGTAA
Upstream 100 bases:
>100_bases GGTAAAAAAATAGCGCGGGTAAAAAGGTCAACGAGAAACGCTTGCACCTGTGCGATAATTTGGTACTAACAAGTACCGTT TTTAGATCGGAGAGAGCACG
Downstream 100 bases:
>100_bases ATGAACATTGCCGAGTACAGTATTCGCCACAAGGTGGTGAGCTGGCTGTTCACGCTGATCTTGTTGATCGGTGGGGTGGT GAGCTTTACCCGCTTAGGGC
Product: multidrug ABC transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 357; Mature: 357
Protein sequence:
>357_residues MQRFWVTLGLALALWGCGEEPQAEAPMPQPVKLQTVNGGDGTLRHYPGKVVATEGSELAFRVSGQLERLPVRAGEQVKKG QLLAALDPSDFKNQLADRQAQHDLAESQYQRGISLRERGVISEAQFDEIEAKRRQAQAALSLARDNVNYTRLKAPYGGTV ARTEVENYQFVQAKQPILYLQGDKNIDIEFAVSERFFTNVRKFFTKMREDYQPSVRFKGAPDTTFKARYKEHEASAGDRT QTYIITLTMPNPEGIMVLPGMSVDVEIDLSQIMPGTEKVPVVPAAAVFNPDGKEGAHVWKHQDDDTVTAVPVTLGEVVGG GVQITDGLQPGDRIVAAGVHRLKEGQAVRELVKERGL
Sequences:
>Translated_357_residues MQRFWVTLGLALALWGCGEEPQAEAPMPQPVKLQTVNGGDGTLRHYPGKVVATEGSELAFRVSGQLERLPVRAGEQVKKG QLLAALDPSDFKNQLADRQAQHDLAESQYQRGISLRERGVISEAQFDEIEAKRRQAQAALSLARDNVNYTRLKAPYGGTV ARTEVENYQFVQAKQPILYLQGDKNIDIEFAVSERFFTNVRKFFTKMREDYQPSVRFKGAPDTTFKARYKEHEASAGDRT QTYIITLTMPNPEGIMVLPGMSVDVEIDLSQIMPGTEKVPVVPAAAVFNPDGKEGAHVWKHQDDDTVTAVPVTLGEVVGG GVQITDGLQPGDRIVAAGVHRLKEGQAVRELVKERGL >Mature_357_residues MQRFWVTLGLALALWGCGEEPQAEAPMPQPVKLQTVNGGDGTLRHYPGKVVATEGSELAFRVSGQLERLPVRAGEQVKKG QLLAALDPSDFKNQLADRQAQHDLAESQYQRGISLRERGVISEAQFDEIEAKRRQAQAALSLARDNVNYTRLKAPYGGTV ARTEVENYQFVQAKQPILYLQGDKNIDIEFAVSERFFTNVRKFFTKMREDYQPSVRFKGAPDTTFKARYKEHEASAGDRT QTYIITLTMPNPEGIMVLPGMSVDVEIDLSQIMPGTEKVPVVPAAAVFNPDGKEGAHVWKHQDDDTVTAVPVTLGEVVGG GVQITDGLQPGDRIVAAGVHRLKEGQAVRELVKERGL
Specific function: The periplasmic linker component of an organic solvent efflux pump. Involved in export of a number of organic solvents, including toluene and styrene. This is the most important solvent efflux pump in this strain, although it can export AMP and some antib
COG id: COG0845
COG function: function code M; Membrane-fusion protein
Gene ontology:
Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]
Homologues:
Organism=Escherichia coli, GI87081796, Length=376, Percent_Identity=27.1276595744681, Blast_Score=85, Evalue=9e-18, Organism=Escherichia coli, GI1789665, Length=368, Percent_Identity=23.6413043478261, Blast_Score=67, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006143 [H]
Pfam domain/function: PF00529 HlyD [H]
EC number: NA
Molecular weight: Translated: 39395; Mature: 39395
Theoretical pI: Translated: 6.28; Mature: 6.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQRFWVTLGLALALWGCGEEPQAEAPMPQPVKLQTVNGGDGTLRHYPGKVVATEGSELAF CCEEEEHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCEEECCCEEEEECCCEEEE RVSGQLERLPVRAGEQVKKGQLLAALDPSDFKNQLADRQAQHDLAESQYQRGISLRERGV EECCCCEECCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCC ISEAQFDEIEAKRRQAQAALSLARDNVNYTRLKAPYGGTVARTEVENYQFVQAKQPILYL CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCEEEEECCCCEEEE QGDKNIDIEFAVSERFFTNVRKFFTKMREDYQPSVRFKGAPDTTFKARYKEHEASAGDRT ECCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHCCCCCCCC QTYIITLTMPNPEGIMVLPGMSVDVEIDLSQIMPGTEKVPVVPAAAVFNPDGKEGAHVWK EEEEEEEEECCCCCEEEECCCEEEEEEEHHHCCCCCCCCCCEEEEEEECCCCCCCCEECC HQDDDTVTAVPVTLGEVVGGGVQITDGLQPGDRIVAAGVHRLKEGQAVRELVKERGL CCCCCCEEEEEEEHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCC >Mature Secondary Structure MQRFWVTLGLALALWGCGEEPQAEAPMPQPVKLQTVNGGDGTLRHYPGKVVATEGSELAF CCEEEEHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCEEECCCEEEEECCCEEEE RVSGQLERLPVRAGEQVKKGQLLAALDPSDFKNQLADRQAQHDLAESQYQRGISLRERGV EECCCCEECCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCC ISEAQFDEIEAKRRQAQAALSLARDNVNYTRLKAPYGGTVARTEVENYQFVQAKQPILYL CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCEEEEECCCCEEEE QGDKNIDIEFAVSERFFTNVRKFFTKMREDYQPSVRFKGAPDTTFKARYKEHEASAGDRT ECCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHCCCCCCCC QTYIITLTMPNPEGIMVLPGMSVDVEIDLSQIMPGTEKVPVVPAAAVFNPDGKEGAHVWK EEEEEEEEECCCCCEEEECCCEEEEEEEHHHCCCCCCCCCCEEEEEEECCCCCCCCEECC HQDDDTVTAVPVTLGEVVGGGVQITDGLQPGDRIVAAGVHRLKEGQAVRELVKERGL CCCCCCEEEEEEEHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11395460 [H]