| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110835469
Identifier: 110835469
GI number: 110835469
Start: 2951796
End: 2952755
Strand: Reverse
Name: 110835469
Synonym: ABO_2608
Alternate gene names: NA
Gene position: 2952755-2951796 (Counterclockwise)
Preceding gene: 110835471
Following gene: 110835468
Centisome position: 94.64
GC content: 49.69
Gene sequence:
>960_bases ATGGCTAATCCTTTCGATCGCGATCAGATTATTCAGCAATGGCAGCCCCTTAATTGGGAAGCCTTTGATCCTCTGAGTGA ATCCAGCCAGCGTTATGTGGCGTACTACGGCCTTAATTTTGCCGAACAGCTGCCGGATCTGGAACACGGCTTCGGTTATT TCGAGGCGGCAGGGTACATGCTTTCTGTGCATGGTTGGCGGCCACGAGGGGCACAACCTCCCAAGGGCACGGTGTTGATT TGTCATGGATACTTCGACCATGTGGGGTTATATCGGCATGTGATTGGCCATGTGCTGGAGCTGGGTTACGCCGTGCTGGC CTATGACTTGCCTGGCCATGGTTTGAGTACAGGACCGCAGGCCGTGATTGCGGATTTTCGAACTTACCGTGATGTGCTTG AGCAGTGCTTGTCGTTGGCGGCGAACCACTTTCCCAAACCTTGGCATGTAATAGCTCAGAGTACTGGTGGCGCCATCGTG ATGGATTATTTGCTGAGCCGAGGAGAGGGCGATGATAATCCTTTCGAGCAGGTTATCTTACTGGCGCCTTTGGTGCGCCC CTTTAAATGGGAGACCGCTCGCTGGCTGCATACGCTGATCAGCCCATTTACGAAAACATTGAAACGGGTTTTCACTATTA ATTCCAATGATCCTGATTTCCTCGATTTCCTGGAAAATAAAGACCCACTTCAGGCGCGCAGAATTTCAGCTATTTGGGTG AGTGCTTTAAAGAAGTGGTTGCCGGGTTTTGAAAAAGCATCACGGATAAAGGTATCGCCGGTGGTGATTCAAGGCGATTT AGATGAAACCGTGGACTGGAAATATAACCTTAAGGTGATTAGAGCGAAGTTTGAAGATCCGGATATTCGGGTTTTGCCAG GGGCTCGGCATCAGCTTGCCAATGAGAATGAGACGTTCAGACGTAAAATATTTGCCATTATTGACGAGTACCTCGGTTAA
Upstream 100 bases:
>100_bases ATCGTTGAGTGTATCTGCGGTTAGATGCATGGTGTGATTCCTCCTAGGCCCGTATTATCAGTGCCTGCCGTGAGCAAACC GTGGAGGCCCGTTACCGGTT
Downstream 100 bases:
>100_bases TAGTAATTTTTTACGCTTTGTTACTTGAGCTCGTAGCGGCTTTGTAAGAATGTGGTTGCACGGTTCCCGACTAGGGGGTT TTTAGTTTTTACAAGGAGTC
Product: hypothetical protein
Products: NA
Alternate protein names: Alpha/Beta Hydrolase Fold Protein; Alpha/Beta Hydrolase Fold; Lipase; Monoglyceride Lipase; Alpha/Beta Hydrolase; Alpha/Beta Hydrolase Family Protein; Hydrolase Alpha/Beta Fold Family; Hydrolase Alpha/Beta Fold Family Protein; Lysophospholipase-Like Protein
Number of amino acids: Translated: 319; Mature: 318
Protein sequence:
>319_residues MANPFDRDQIIQQWQPLNWEAFDPLSESSQRYVAYYGLNFAEQLPDLEHGFGYFEAAGYMLSVHGWRPRGAQPPKGTVLI CHGYFDHVGLYRHVIGHVLELGYAVLAYDLPGHGLSTGPQAVIADFRTYRDVLEQCLSLAANHFPKPWHVIAQSTGGAIV MDYLLSRGEGDDNPFEQVILLAPLVRPFKWETARWLHTLISPFTKTLKRVFTINSNDPDFLDFLENKDPLQARRISAIWV SALKKWLPGFEKASRIKVSPVVIQGDLDETVDWKYNLKVIRAKFEDPDIRVLPGARHQLANENETFRRKIFAIIDEYLG
Sequences:
>Translated_319_residues MANPFDRDQIIQQWQPLNWEAFDPLSESSQRYVAYYGLNFAEQLPDLEHGFGYFEAAGYMLSVHGWRPRGAQPPKGTVLI CHGYFDHVGLYRHVIGHVLELGYAVLAYDLPGHGLSTGPQAVIADFRTYRDVLEQCLSLAANHFPKPWHVIAQSTGGAIV MDYLLSRGEGDDNPFEQVILLAPLVRPFKWETARWLHTLISPFTKTLKRVFTINSNDPDFLDFLENKDPLQARRISAIWV SALKKWLPGFEKASRIKVSPVVIQGDLDETVDWKYNLKVIRAKFEDPDIRVLPGARHQLANENETFRRKIFAIIDEYLG >Mature_318_residues ANPFDRDQIIQQWQPLNWEAFDPLSESSQRYVAYYGLNFAEQLPDLEHGFGYFEAAGYMLSVHGWRPRGAQPPKGTVLIC HGYFDHVGLYRHVIGHVLELGYAVLAYDLPGHGLSTGPQAVIADFRTYRDVLEQCLSLAANHFPKPWHVIAQSTGGAIVM DYLLSRGEGDDNPFEQVILLAPLVRPFKWETARWLHTLISPFTKTLKRVFTINSNDPDFLDFLENKDPLQARRISAIWVS ALKKWLPGFEKASRIKVSPVVIQGDLDETVDWKYNLKVIRAKFEDPDIRVLPGARHQLANENETFRRKIFAIIDEYLG
Specific function: Unknown
COG id: COG2267
COG function: function code I; Lysophospholipase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI6005786, Length=289, Percent_Identity=26.9896193771626, Blast_Score=79, Evalue=6e-15, Organism=Homo sapiens, GI51242953, Length=283, Percent_Identity=27.208480565371, Blast_Score=79, Evalue=6e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36478; Mature: 36347
Theoretical pI: Translated: 6.59; Mature: 6.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANPFDRDQIIQQWQPLNWEAFDPLSESSQRYVAYYGLNFAEQLPDLEHGFGYFEAAGYM CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHCCCCHHCCCHHHHCCEE LSVHGWRPRGAQPPKGTVLICHGYFDHVGLYRHVIGHVLELGYAVLAYDLPGHGLSTGPQ EEEECCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCHH AVIADFRTYRDVLEQCLSLAANHFPKPWHVIAQSTGGAIVMDYLLSRGEGDDNPFEQVIL HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCHHHHHHH LAPLVRPFKWETARWLHTLISPFTKTLKRVFTINSNDPDFLDFLENKDPLQARRISAIWV HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHCCCCCHHHHHHHHHHH SALKKWLPGFEKASRIKVSPVVIQGDLDETVDWKYNLKVIRAKFEDPDIRVLPGARHQLA HHHHHHCCCCCCCCCEEECEEEEECCCCCCCCCEEEEEEEEEECCCCCEEECCCHHHHHC NENETFRRKIFAIIDEYLG CCCHHHHHHHHHHHHHHCC >Mature Secondary Structure ANPFDRDQIIQQWQPLNWEAFDPLSESSQRYVAYYGLNFAEQLPDLEHGFGYFEAAGYM CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHCCCCHHCCCHHHHCCEE LSVHGWRPRGAQPPKGTVLICHGYFDHVGLYRHVIGHVLELGYAVLAYDLPGHGLSTGPQ EEEECCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCHH AVIADFRTYRDVLEQCLSLAANHFPKPWHVIAQSTGGAIVMDYLLSRGEGDDNPFEQVIL HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCHHHHHHH LAPLVRPFKWETARWLHTLISPFTKTLKRVFTINSNDPDFLDFLENKDPLQARRISAIWV HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHCCCCCHHHHHHHHHHH SALKKWLPGFEKASRIKVSPVVIQGDLDETVDWKYNLKVIRAKFEDPDIRVLPGARHQLA HHHHHHCCCCCCCCCEEECEEEEECCCCCCCCCEEEEEEEEEECCCCCEEECCCHHHHHC NENETFRRKIFAIIDEYLG CCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA