| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110835456
Identifier: 110835456
GI number: 110835456
Start: 2935502
End: 2938462
Strand: Reverse
Name: 110835456
Synonym: ABO_2595
Alternate gene names: NA
Gene position: 2938462-2935502 (Counterclockwise)
Preceding gene: 110835457
Following gene: 110835455
Centisome position: 94.18
GC content: 57.08
Gene sequence:
>2961_bases ATGATGCGAATAAGCATACTTTTTGCGGCCGCACTGGTGCTGATTGCCTGTGGTGATAGTGGCAGCAAACGGACGGTGGA TTACAGTGGCAACACCAGCGGCCAGGTATTCTATAGCTACCCGGCGGATGGCCAGACTCAGGTCTCGGTGCACGCTCCGG TGGTGGTGCAGTTCTCCGAAGCACGGAATATAGCGCCGGCGAATATTACCCTTGCGGGCCCAGACGGTCCTGTCGAGGTG GACGTCACCGAGGCCGATGAGTGGCGCTCAGTGATTGTCACGCCACGCGAGGCGCTGGCGTTCAACAGTGAGTACACCCT GAGCGTGAACGGTGTCAGCCTAACCGGGTTAGAGGATGGCACACTGAGCTTTACTACCGCTTCGGCGCAGGAAGGCCCGC ACGTCGAGCAGGTGTTAAGTGATGAACTGGTGATCAGTCGGCGTATGCCGTTTGGGGATGACCAGCCGTTCATGGATTTC TCCACCATCCACCTGCAATTCTCGCAGCCGCTGGATCGCACTACCGTGGATAACACCACAGTAAGCTTGAAAGATGCTCG CGGAAACCGGGTTGCGGCCACCTTGCTGGTAGACGGCACACGGGTAACCCTTGATCCAAAGAATGACCTGACTCCGGGTA GCGAGTACACCCTGCAGCTGGATGGGGCCCTGACCAGTGAAACCGGCGTGGCTTACAGCGGGGAAAATAGCATCACGCTA ATCCCGCAAGATTCCGCCCCTCGGGAAACTCTAGTGCTGGAGGTCATGGCTGCAGACCCTACCAAAGAGTGTAACGCGAG TGGCGTTATGCTGTCGCCGCTGAGCGGGGATCCGATCAATTGCGTGCCATTAATCAGTAAATTGTTGGGCGATGACACCT CCGCCAAGCTGTCTGGTGATGTGTTTGCAGAGTTAGGATTTATACCCAATTATCCGGACGCCGCCCCATTGCGAATCCGC AAAGGTTCGGTCCTCAAGGGTGAGTCGCTGGATGTGCTGATCGTCGGCGAGTTGCCCGCGAGTTTCGATTCTGGAGAGGT GACCGTGAGCTTCCTGTCCGATGCCTCTGGGTATCTTTCAGTGGCCCCGTATAGCACGGCTCACGAAGCACCACGACGGG TGCAGTTGACCCTAGACCTTGCGTTCTCTACAGCAGATTCCCGCGCCAACGGCGCCTTCACCCAGACCTTACTGCAGGTC GAGTTGGTGGGTCGCGCTATTGTTGTAGATGGCCGCATGGTCATCGATGCCCTAGGCGTGGTAGAACCAGATGTGCTGGG CTTGGAAACCGCCTTCGGCGTGCTCAGCTTCCATATGGAATCTTACCAGGATCAGGTAAATGCGCCCGAGCCCGAAGTTG ATATTACCGGCCCGGGGCTGCAAAGCTGGCAGCCTGGCGACTACGTCGATCGTTTCCGCCCCGGCGACCCGGTGGTGCTG AACTTTGATGAGATTCCAAACCAGGACACCATTATTCCGGGCACCACAGTGAGGCTGACCCAGCAGGGAGCCCAGGTGCC CTTCCAGTGGCGACTTGACGGTGCTTCCCTGGTGCTTACCCCGGATGCCCCGCTGGAATTTGGCGCTGATTACCAAGTGG TATTCACCGATGGCATACAGGACCTGAGTGGCAACCCGGCCAACCCGCGAACCCTCGACTTCACCATGGTCGATGCCACC ACTACCAGTGGCGCACGCACGCCCTATACCACCACAGTGTATCCCGGCTTCCCCTGCGCCATTAACCCAGGTAGCGAAAA CTTGGCCAATGGCATTCAGGGTCAGTGTGTCAGTGCTTATCAAGATGATGTCGGTGATTTTTTGCCGGTGCCGCCCTTGC CTGCTAACCGTTCCATTGAGGTGCAGTTCTCGCGCAACATAGACCCCGATAGCATGAAGCTGGGCTCTGCGTGCGGGCAA GGCAGTGTTCGGGTGGAAAAAATAGACACAGCGGGGAACTGCCTGGATGTGGTGCCCGCCCACCTGACCCTAGAAACGCG CAAGCTGACCATTACCCCGCAACAGCCCTGGGAAGACGGCACCCTGTATCGTTATGTGCTGGCGTCCCATGAGCGGGCAG GTTGTGCCGGTGATGTGATTTGTTCGCAAGACAATATGCCCCTGCAAACCGCCCAGCTATTAGGGCCGGATGCGGATGAG GGTGGCCCGAACATGGCTATTGCCTTCACCGGTGCGCCGCCCAGCGACAATGTGCTGCTGCCATTGCGTAATCTGCCCAA GTCAGACGTGAATGCCAACTTTGAGCTGGAAGATACTGAACTCAAAGCGACGGAAGAGCCGCCGGGCAGCGGCTTGTACC CATCACCGACCAATGCCGCCAAGCTGGCTGTCACTGATGTTGGCGGGCTGGTTACGGCGGCAAACATCGGCTGCAATATT AACGATACTTGCCCGGCGGATAAGTTTACTTATCTCAATGGCGGGATCATTGCCGATATCGCTGGCTGGGATGAAGCGGA GCAAGCGCTCAAAGTCATCCTCTATCCGCCCGTGTTGATGACAACCAACACCAGTGTTTACGCACAGATCGCCGGTTTGG TCAGCCCTAACGTGCCCACCGAGCCCTTGGTGATGCGTGGCCGTTATGAGGAGGATGAAAGCGGCAATCGGACGCAGCCG TTAATCGGGTGGATTCGCTATGATGAGGAGGAAGATCAGTTAATGTTTGAGCTCACTCTTGATCTGCTGCTGGATGCCCC GGAAATGGAGGCCCCACTAGGGTTGCCCTTTAACCTGCACGGTTATCCTATGGATGATTTGCAATTGTTGGGCCCTGTGG ACTTTTTGGCAGATGGCAGATTGGTTATCAGCTTGTTGAGCATGGCGGATCAGAACATTGATGTGCGCATTGGCGGGCCG GTGGCCACCATTGATCTGCAGCTTCCTACTGGAGGAGTGAACCTCACCTTCCAGAGCGGCTCCATTAAGAAACCGCAGTA A
Upstream 100 bases:
>100_bases TTACCCGCAGCCCAGCACGCAGGTTGACGCTAGTGGCGAAGTGAATGTGATCAGCGGTTTGATCGCGCTTAAATTTTAAA CTTGGGAGAAAAACACAAAA
Downstream 100 bases:
>100_bases CCTCACTGTTTCTAACAGTGGCACTCAAGCCGGCCTGCGGGCCGGCTTTTTTGTGCCTGGGGGCCGGGTCGCGTGTTTGA ACGCAGTGTTCCCGCATTGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 986; Mature: 986
Protein sequence:
>986_residues MMRISILFAAALVLIACGDSGSKRTVDYSGNTSGQVFYSYPADGQTQVSVHAPVVVQFSEARNIAPANITLAGPDGPVEV DVTEADEWRSVIVTPREALAFNSEYTLSVNGVSLTGLEDGTLSFTTASAQEGPHVEQVLSDELVISRRMPFGDDQPFMDF STIHLQFSQPLDRTTVDNTTVSLKDARGNRVAATLLVDGTRVTLDPKNDLTPGSEYTLQLDGALTSETGVAYSGENSITL IPQDSAPRETLVLEVMAADPTKECNASGVMLSPLSGDPINCVPLISKLLGDDTSAKLSGDVFAELGFIPNYPDAAPLRIR KGSVLKGESLDVLIVGELPASFDSGEVTVSFLSDASGYLSVAPYSTAHEAPRRVQLTLDLAFSTADSRANGAFTQTLLQV ELVGRAIVVDGRMVIDALGVVEPDVLGLETAFGVLSFHMESYQDQVNAPEPEVDITGPGLQSWQPGDYVDRFRPGDPVVL NFDEIPNQDTIIPGTTVRLTQQGAQVPFQWRLDGASLVLTPDAPLEFGADYQVVFTDGIQDLSGNPANPRTLDFTMVDAT TTSGARTPYTTTVYPGFPCAINPGSENLANGIQGQCVSAYQDDVGDFLPVPPLPANRSIEVQFSRNIDPDSMKLGSACGQ GSVRVEKIDTAGNCLDVVPAHLTLETRKLTITPQQPWEDGTLYRYVLASHERAGCAGDVICSQDNMPLQTAQLLGPDADE GGPNMAIAFTGAPPSDNVLLPLRNLPKSDVNANFELEDTELKATEEPPGSGLYPSPTNAAKLAVTDVGGLVTAANIGCNI NDTCPADKFTYLNGGIIADIAGWDEAEQALKVILYPPVLMTTNTSVYAQIAGLVSPNVPTEPLVMRGRYEEDESGNRTQP LIGWIRYDEEEDQLMFELTLDLLLDAPEMEAPLGLPFNLHGYPMDDLQLLGPVDFLADGRLVISLLSMADQNIDVRIGGP VATIDLQLPTGGVNLTFQSGSIKKPQ
Sequences:
>Translated_986_residues MMRISILFAAALVLIACGDSGSKRTVDYSGNTSGQVFYSYPADGQTQVSVHAPVVVQFSEARNIAPANITLAGPDGPVEV DVTEADEWRSVIVTPREALAFNSEYTLSVNGVSLTGLEDGTLSFTTASAQEGPHVEQVLSDELVISRRMPFGDDQPFMDF STIHLQFSQPLDRTTVDNTTVSLKDARGNRVAATLLVDGTRVTLDPKNDLTPGSEYTLQLDGALTSETGVAYSGENSITL IPQDSAPRETLVLEVMAADPTKECNASGVMLSPLSGDPINCVPLISKLLGDDTSAKLSGDVFAELGFIPNYPDAAPLRIR KGSVLKGESLDVLIVGELPASFDSGEVTVSFLSDASGYLSVAPYSTAHEAPRRVQLTLDLAFSTADSRANGAFTQTLLQV ELVGRAIVVDGRMVIDALGVVEPDVLGLETAFGVLSFHMESYQDQVNAPEPEVDITGPGLQSWQPGDYVDRFRPGDPVVL NFDEIPNQDTIIPGTTVRLTQQGAQVPFQWRLDGASLVLTPDAPLEFGADYQVVFTDGIQDLSGNPANPRTLDFTMVDAT TTSGARTPYTTTVYPGFPCAINPGSENLANGIQGQCVSAYQDDVGDFLPVPPLPANRSIEVQFSRNIDPDSMKLGSACGQ GSVRVEKIDTAGNCLDVVPAHLTLETRKLTITPQQPWEDGTLYRYVLASHERAGCAGDVICSQDNMPLQTAQLLGPDADE GGPNMAIAFTGAPPSDNVLLPLRNLPKSDVNANFELEDTELKATEEPPGSGLYPSPTNAAKLAVTDVGGLVTAANIGCNI NDTCPADKFTYLNGGIIADIAGWDEAEQALKVILYPPVLMTTNTSVYAQIAGLVSPNVPTEPLVMRGRYEEDESGNRTQP LIGWIRYDEEEDQLMFELTLDLLLDAPEMEAPLGLPFNLHGYPMDDLQLLGPVDFLADGRLVISLLSMADQNIDVRIGGP VATIDLQLPTGGVNLTFQSGSIKKPQ >Mature_986_residues MMRISILFAAALVLIACGDSGSKRTVDYSGNTSGQVFYSYPADGQTQVSVHAPVVVQFSEARNIAPANITLAGPDGPVEV DVTEADEWRSVIVTPREALAFNSEYTLSVNGVSLTGLEDGTLSFTTASAQEGPHVEQVLSDELVISRRMPFGDDQPFMDF STIHLQFSQPLDRTTVDNTTVSLKDARGNRVAATLLVDGTRVTLDPKNDLTPGSEYTLQLDGALTSETGVAYSGENSITL IPQDSAPRETLVLEVMAADPTKECNASGVMLSPLSGDPINCVPLISKLLGDDTSAKLSGDVFAELGFIPNYPDAAPLRIR KGSVLKGESLDVLIVGELPASFDSGEVTVSFLSDASGYLSVAPYSTAHEAPRRVQLTLDLAFSTADSRANGAFTQTLLQV ELVGRAIVVDGRMVIDALGVVEPDVLGLETAFGVLSFHMESYQDQVNAPEPEVDITGPGLQSWQPGDYVDRFRPGDPVVL NFDEIPNQDTIIPGTTVRLTQQGAQVPFQWRLDGASLVLTPDAPLEFGADYQVVFTDGIQDLSGNPANPRTLDFTMVDAT TTSGARTPYTTTVYPGFPCAINPGSENLANGIQGQCVSAYQDDVGDFLPVPPLPANRSIEVQFSRNIDPDSMKLGSACGQ GSVRVEKIDTAGNCLDVVPAHLTLETRKLTITPQQPWEDGTLYRYVLASHERAGCAGDVICSQDNMPLQTAQLLGPDADE GGPNMAIAFTGAPPSDNVLLPLRNLPKSDVNANFELEDTELKATEEPPGSGLYPSPTNAAKLAVTDVGGLVTAANIGCNI NDTCPADKFTYLNGGIIADIAGWDEAEQALKVILYPPVLMTTNTSVYAQIAGLVSPNVPTEPLVMRGRYEEDESGNRTQP LIGWIRYDEEEDQLMFELTLDLLLDAPEMEAPLGLPFNLHGYPMDDLQLLGPVDFLADGRLVISLLSMADQNIDVRIGGP VATIDLQLPTGGVNLTFQSGSIKKPQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 105288; Mature: 105288
Theoretical pI: Translated: 3.96; Mature: 3.96
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMRISILFAAALVLIACGDSGSKRTVDYSGNTSGQVFYSYPADGQTQVSVHAPVVVQFSE CEEEHHHHHHHHEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCEEEEECC ARNIAPANITLAGPDGPVEVDVTEADEWRSVIVTPREALAFNSEYTLSVNGVSLTGLEDG CCCCCCCEEEEECCCCCEEEEEECCCCCCEEEECCHHHHEECCEEEEEECCEEEECCCCC TLSFTTASAQEGPHVEQVLSDELVISRRMPFGDDQPFMDFSTIHLQFSQPLDRTTVDNTT EEEEEECCCCCCCCHHHHHCCCEEEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEE VSLKDARGNRVAATLLVDGTRVTLDPKNDLTPGSEYTLQLDGALTSETGVAYSGENSITL EEEECCCCCEEEEEEEECCEEEEECCCCCCCCCCCEEEEECCCEECCCCEEECCCCEEEE IPQDSAPRETLVLEVMAADPTKECNASGVMLSPLSGDPINCVPLISKLLGDDTSAKLSGD EECCCCCCCEEEEEEEECCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCEECCC VFAELGFIPNYPDAAPLRIRKGSVLKGESLDVLIVGELPASFDSGEVTVSFLSDASGYLS CCEEECCCCCCCCCCCEEEECCCEECCCCCCEEEEECCCCCCCCCCEEEEEECCCCCEEE VAPYSTAHEAPRRVQLTLDLAFSTADSRANGAFTQTLLQVELVGRAIVVDGRMVIDALGV ECCCCCCCCCCCEEEEEEEEEEECCCCCCCCHHHHHHHEEEEECEEEEECCEEEEEECCC VEPDVLGLETAFGVLSFHMESYQDQVNAPEPEVDITGPGLQSWQPGDYVDRFRPGDPVVL CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEE NFDEIPNQDTIIPGTTVRLTQQGAQVPFQWRLDGASLVLTPDAPLEFGADYQVVFTDGIQ EHHCCCCCCEECCCCEEEEECCCCCCCEEEEECCCEEEECCCCCCCCCCCEEEEEECCCH DLSGNPANPRTLDFTMVDATTTSGARTPYTTTVYPGFPCAINPGSENLANGIQGQCVSAY HCCCCCCCCEEEEEEEEEEECCCCCCCCEEEEECCCCCEEECCCCHHHHCCCCCCCHHHH QDDVGDFLPVPPLPANRSIEVQFSRNIDPDSMKLGSACGQGSVRVEKIDTAGNCLDVVPA HHCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCCCCCEEEEEECCCCCEEEECCC HLTLETRKLTITPQQPWEDGTLYRYVLASHERAGCAGDVICSQDNMPLQTAQLLGPDADE EEEEEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCCCC GGPNMAIAFTGAPPSDNVLLPLRNLPKSDVNANFELEDTELKATEEPPGSGLYPSPTNAA CCCEEEEEEECCCCCCCEEEECCCCCCCCCCCCEEEECCEEEECCCCCCCCCCCCCCCCE KLAVTDVGGLVTAANIGCNINDTCPADKFTYLNGGIIADIAGWDEAEQALKVILYPPVLM EEEEEECCCEEEEEECCCCCCCCCCCCCEEEECCCEEEEECCCCHHHHEEEEEEECCEEE TTNTSVYAQIAGLVSPNVPTEPLVMRGRYEEDESGNRTQPLIGWIRYDEEEDQLMFELTL EECCCEEEEEEHHCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEECCCHHCEEEEEEE DLLLDAPEMEAPLGLPFNLHGYPMDDLQLLGPVDFLADGRLVISLLSMADQNIDVRIGGP EHHCCCCCCCCCCCCCEECCCCCCCCHHCCCCHHHHCCCHHHHHHHHHCCCCEEEEECCE VATIDLQLPTGGVNLTFQSGSIKKPQ EEEEEEEECCCCEEEEECCCCCCCCC >Mature Secondary Structure MMRISILFAAALVLIACGDSGSKRTVDYSGNTSGQVFYSYPADGQTQVSVHAPVVVQFSE CEEEHHHHHHHHEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCEEEEECC ARNIAPANITLAGPDGPVEVDVTEADEWRSVIVTPREALAFNSEYTLSVNGVSLTGLEDG CCCCCCCEEEEECCCCCEEEEEECCCCCCEEEECCHHHHEECCEEEEEECCEEEECCCCC TLSFTTASAQEGPHVEQVLSDELVISRRMPFGDDQPFMDFSTIHLQFSQPLDRTTVDNTT EEEEEECCCCCCCCHHHHHCCCEEEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEE VSLKDARGNRVAATLLVDGTRVTLDPKNDLTPGSEYTLQLDGALTSETGVAYSGENSITL EEEECCCCCEEEEEEEECCEEEEECCCCCCCCCCCEEEEECCCEECCCCEEECCCCEEEE IPQDSAPRETLVLEVMAADPTKECNASGVMLSPLSGDPINCVPLISKLLGDDTSAKLSGD EECCCCCCCEEEEEEEECCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCEECCC VFAELGFIPNYPDAAPLRIRKGSVLKGESLDVLIVGELPASFDSGEVTVSFLSDASGYLS CCEEECCCCCCCCCCCEEEECCCEECCCCCCEEEEECCCCCCCCCCEEEEEECCCCCEEE VAPYSTAHEAPRRVQLTLDLAFSTADSRANGAFTQTLLQVELVGRAIVVDGRMVIDALGV ECCCCCCCCCCCEEEEEEEEEEECCCCCCCCHHHHHHHEEEEECEEEEECCEEEEEECCC VEPDVLGLETAFGVLSFHMESYQDQVNAPEPEVDITGPGLQSWQPGDYVDRFRPGDPVVL CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEE NFDEIPNQDTIIPGTTVRLTQQGAQVPFQWRLDGASLVLTPDAPLEFGADYQVVFTDGIQ EHHCCCCCCEECCCCEEEEECCCCCCCEEEEECCCEEEECCCCCCCCCCCEEEEEECCCH DLSGNPANPRTLDFTMVDATTTSGARTPYTTTVYPGFPCAINPGSENLANGIQGQCVSAY HCCCCCCCCEEEEEEEEEEECCCCCCCCEEEEECCCCCEEECCCCHHHHCCCCCCCHHHH QDDVGDFLPVPPLPANRSIEVQFSRNIDPDSMKLGSACGQGSVRVEKIDTAGNCLDVVPA HHCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCCCCCEEEEEECCCCCEEEECCC HLTLETRKLTITPQQPWEDGTLYRYVLASHERAGCAGDVICSQDNMPLQTAQLLGPDADE EEEEEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCCCC GGPNMAIAFTGAPPSDNVLLPLRNLPKSDVNANFELEDTELKATEEPPGSGLYPSPTNAA CCCEEEEEEECCCCCCCEEEECCCCCCCCCCCCEEEECCEEEECCCCCCCCCCCCCCCCE KLAVTDVGGLVTAANIGCNINDTCPADKFTYLNGGIIADIAGWDEAEQALKVILYPPVLM EEEEEECCCEEEEEECCCCCCCCCCCCCEEEECCCEEEEECCCCHHHHEEEEEEECCEEE TTNTSVYAQIAGLVSPNVPTEPLVMRGRYEEDESGNRTQPLIGWIRYDEEEDQLMFELTL EECCCEEEEEEHHCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEECCCHHCEEEEEEE DLLLDAPEMEAPLGLPFNLHGYPMDDLQLLGPVDFLADGRLVISLLSMADQNIDVRIGGP EHHCCCCCCCCCCCCCEECCCCCCCCHHCCCCHHHHCCCHHHHHHHHHCCCCEEEEECCE VATIDLQLPTGGVNLTFQSGSIKKPQ EEEEEEEECCCCEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA