| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110835272
Identifier: 110835272
GI number: 110835272
Start: 2730552
End: 2731295
Strand: Reverse
Name: 110835272
Synonym: ABO_2410
Alternate gene names: NA
Gene position: 2731295-2730552 (Counterclockwise)
Preceding gene: 110835274
Following gene: 110835270
Centisome position: 87.54
GC content: 57.39
Gene sequence:
>744_bases ATGGCGCCGGAAACAGCCCGAGGGCCAGTAATGACACCTGTTATCGCACCACCATCAATCAAACTTCTGCTAGGCGAAAG CCGCGCAGCATGGGCCTATGGGCGCTACCTTTTACGGGGCTTGGAGCACAAGCAACTGCCGTTAGGTAAAAGGCAGCCCG TGATTGTTTTGCCCGGTTTTGGGGCCAGCGACTTGAGCACTCGGCCCTTGCGCATGGCCCTGGGTAAGCTGGGGTATAAC GTGTATGGCTGGGCCCAGGGCACGAATCTGGGCATGAATAGCAAACGTAAAAACCTGTTAGTTACCCAGTTGCAAGAAAT CAGCGCGCGGCACCAGCAACCGGTCGCGCTAGTAGGTTGGAGCTTGGGCGGAGTGTTTGCTCGGGAACTGGCGCGGGCCT TTCCTGATCTGGTGAGTCAGGTCTTTACTCTGGGTAGCCCTATCAATGGCGATCCAGACGCCAATAATGTGTCCACGCTT TTTAGTTGGTTCAATCCGAATCGACCTCCAACCGACAGGGAGGCCTTTAACCAACGCATTGCGGCCCCACCCGTGCCGTG CACAGCCATCTTTACCCGTGAAGACGGCATCGTGGCTTGGCAGTGCAGCCAGGAAGAAAGCGGGCCAATGACTGAAAATG TGGAAGTGCAGGGTACCCATGTGGGGCTACCGTGGAATCCTCAAGTGCTGGCGGCCATTGCCGAGCGTTTGCCGCGCAGC CCGCTACCAGGAGATGTGCCATGA
Upstream 100 bases:
>100_bases CCCCGGCAAATCATTGACCGTCTGGCTGCTGCCGGTCGCCAGTCAGCCACCCCCACCCCACTCAGACAGGTTACCATTGT TCCATAATGCGCCGTTGCTA
Downstream 100 bases:
>100_bases GCGAGTTGCAACCCGGTCGTTACCGGCACTTCAAAGGTAACGAATACCAAGTGCTTGGCTTGGCAACCCATTCTGAGACC GGCGAAACCGTGGTGGTTTA
Product: hypothetical protein
Products: NA
Alternate protein names: Pgap1 Family Protein; PGAP1-Like Protein
Number of amino acids: Translated: 247; Mature: 246
Protein sequence:
>247_residues MAPETARGPVMTPVIAPPSIKLLLGESRAAWAYGRYLLRGLEHKQLPLGKRQPVIVLPGFGASDLSTRPLRMALGKLGYN VYGWAQGTNLGMNSKRKNLLVTQLQEISARHQQPVALVGWSLGGVFARELARAFPDLVSQVFTLGSPINGDPDANNVSTL FSWFNPNRPPTDREAFNQRIAAPPVPCTAIFTREDGIVAWQCSQEESGPMTENVEVQGTHVGLPWNPQVLAAIAERLPRS PLPGDVP
Sequences:
>Translated_247_residues MAPETARGPVMTPVIAPPSIKLLLGESRAAWAYGRYLLRGLEHKQLPLGKRQPVIVLPGFGASDLSTRPLRMALGKLGYN VYGWAQGTNLGMNSKRKNLLVTQLQEISARHQQPVALVGWSLGGVFARELARAFPDLVSQVFTLGSPINGDPDANNVSTL FSWFNPNRPPTDREAFNQRIAAPPVPCTAIFTREDGIVAWQCSQEESGPMTENVEVQGTHVGLPWNPQVLAAIAERLPRS PLPGDVP >Mature_246_residues APETARGPVMTPVIAPPSIKLLLGESRAAWAYGRYLLRGLEHKQLPLGKRQPVIVLPGFGASDLSTRPLRMALGKLGYNV YGWAQGTNLGMNSKRKNLLVTQLQEISARHQQPVALVGWSLGGVFARELARAFPDLVSQVFTLGSPINGDPDANNVSTLF SWFNPNRPPTDREAFNQRIAAPPVPCTAIFTREDGIVAWQCSQEESGPMTENVEVQGTHVGLPWNPQVLAAIAERLPRSP LPGDVP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26858; Mature: 26727
Theoretical pI: Translated: 9.57; Mature: 9.57
Prosite motif: PS00120 LIPASE_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPETARGPVMTPVIAPPSIKLLLGESRAAWAYGRYLLRGLEHKQLPLGKRQPVIVLPGF CCCCCCCCCEECCEECCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCC GASDLSTRPLRMALGKLGYNVYGWAQGTNLGMNSKRKNLLVTQLQEISARHQQPVALVGW CCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEC SLGGVFARELARAFPDLVSQVFTLGSPINGDPDANNVSTLFSWFNPNRPPTDREAFNQRI CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHCCC AAPPVPCTAIFTREDGIVAWQCSQEESGPMTENVEVQGTHVGLPWNPQVLAAIAERLPRS CCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCC PLPGDVP CCCCCCC >Mature Secondary Structure APETARGPVMTPVIAPPSIKLLLGESRAAWAYGRYLLRGLEHKQLPLGKRQPVIVLPGF CCCCCCCCEECCEECCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCC GASDLSTRPLRMALGKLGYNVYGWAQGTNLGMNSKRKNLLVTQLQEISARHQQPVALVGW CCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEC SLGGVFARELARAFPDLVSQVFTLGSPINGDPDANNVSTLFSWFNPNRPPTDREAFNQRI CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHCCC AAPPVPCTAIFTREDGIVAWQCSQEESGPMTENVEVQGTHVGLPWNPQVLAAIAERLPRS CCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCC PLPGDVP CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA