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The map label for this gene is rdgC [H]

Identifier: 110835274

GI number: 110835274

Start: 2732145

End: 2733050

Strand: Reverse

Name: rdgC [H]

Synonym: ABO_2413

Alternate gene names: 110835274

Gene position: 2733050-2732145 (Counterclockwise)

Preceding gene: 110835277

Following gene: 110835272

Centisome position: 87.59

GC content: 55.08

Gene sequence:

>906_bases
ATGTGGATCAAGAACCTGACTGTCTTTGTGGGTGAAGAAGCCTTCCCCTGCTCCGTGGCCGAACTGGATGAAATTCTCGA
CCAGAACCGTTGCCAACCCTGTGGCTCGCAGACGGAGCGCACAGAAGGGTTTGTGCCGCCGCTCAAGGGGCAAGACCCCA
TGGCCTACGCGGTGGACGGGTTTATTTTTTGCACCTATCAAGAAACCGCTCGCTTGTTGCCTGGGCCGGTGATCAAGGAA
CTGTTGGATGAAAAAGTGGAGCACATTCAGCAAGAAGAAGGTCGCAAGGTTGGGCGCAAAGAAAAGGCCGATCTTAAAGA
GCAGATTACCTTCGAGCTGATGCCTCGGGCTTTTACTCGCTCGCGCCGCACCTCCTTGCTTATCGACACTGAGCGTAAGC
GGGTAATGGTGGATTCTTCCTCCGCCAGTCGCGGTGAAGAAGTCATCGCCTGCCTGCGTAAAGCCATCGGCACCCTGCCC
GTAGCGTACCCGGCGCCAAACTCGGCCCCTTACACAAGCTTTAGCAATTGGTTGCGCGATACCAAACTGCTGCCGGAAGG
CTTCACTCTGGGAGACCGTTGTGAGCTGAAAGGCATCAAGGATGAAGGGGCCGCAGTCAAGTTCACCGCCGTGGACCTAG
GGCAGGAAGAAATTCTCGCACACCTGGAAACGGGGATGGTCGCCACCCGTATCAACTTGGCTTGGCAGGATTCGTTAGAA
CTGGATATCAACGACAAGCTGGAGATCAAGCGTATTAAGGCGCTGGATCTGCTACAGGAAAACATAGATGCACTGGACGC
AGAAGACGCGGTAGCCGAATTGCAGGCGCGTATTAGCTTGCAGGGCAAGGTGCTACGCGACGCCATTGACAGCCTGTACG
GTTATTTTGAAGTGAATCCGGCGTAA

Upstream 100 bases:

>100_bases
TTGAGCCGCCCTCGGCATTTCGCTACTGTGGCCGACCGGCGTTGGCCGCCCTCATTATCGGCAGTGCATTTTCTCACTGC
CCCTGCTTTTGGAAAACTCT

Downstream 100 bases:

>100_bases
CCGCCGTTTCGCAAAGGCTTTGCCCGCGCTCCCCATTCAGGGGCGCGGGTAATGCGTTTAATCATTTGATGACAGCGATG
CGCGTTGCTGCTCAGTCCTC

Product: recombination associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MWIKNLTVFVGEEAFPCSVAELDEILDQNRCQPCGSQTERTEGFVPPLKGQDPMAYAVDGFIFCTYQETARLLPGPVIKE
LLDEKVEHIQQEEGRKVGRKEKADLKEQITFELMPRAFTRSRRTSLLIDTERKRVMVDSSSASRGEEVIACLRKAIGTLP
VAYPAPNSAPYTSFSNWLRDTKLLPEGFTLGDRCELKGIKDEGAAVKFTAVDLGQEEILAHLETGMVATRINLAWQDSLE
LDINDKLEIKRIKALDLLQENIDALDAEDAVAELQARISLQGKVLRDAIDSLYGYFEVNPA

Sequences:

>Translated_301_residues
MWIKNLTVFVGEEAFPCSVAELDEILDQNRCQPCGSQTERTEGFVPPLKGQDPMAYAVDGFIFCTYQETARLLPGPVIKE
LLDEKVEHIQQEEGRKVGRKEKADLKEQITFELMPRAFTRSRRTSLLIDTERKRVMVDSSSASRGEEVIACLRKAIGTLP
VAYPAPNSAPYTSFSNWLRDTKLLPEGFTLGDRCELKGIKDEGAAVKFTAVDLGQEEILAHLETGMVATRINLAWQDSLE
LDINDKLEIKRIKALDLLQENIDALDAEDAVAELQARISLQGKVLRDAIDSLYGYFEVNPA
>Mature_301_residues
MWIKNLTVFVGEEAFPCSVAELDEILDQNRCQPCGSQTERTEGFVPPLKGQDPMAYAVDGFIFCTYQETARLLPGPVIKE
LLDEKVEHIQQEEGRKVGRKEKADLKEQITFELMPRAFTRSRRTSLLIDTERKRVMVDSSSASRGEEVIACLRKAIGTLP
VAYPAPNSAPYTSFSNWLRDTKLLPEGFTLGDRCELKGIKDEGAAVKFTAVDLGQEEILAHLETGMVATRINLAWQDSLE
LDINDKLEIKRIKALDLLQENIDALDAEDAVAELQARISLQGKVLRDAIDSLYGYFEVNPA

Specific function: May be involved in recombination [H]

COG id: COG2974

COG function: function code L; DNA recombination-dependent growth factor C

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rdgC family [H]

Homologues:

Organism=Escherichia coli, GI1786592, Length=270, Percent_Identity=33.3333333333333, Blast_Score=168, Evalue=3e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007476 [H]

Pfam domain/function: PF04381 RdgC [H]

EC number: NA

Molecular weight: Translated: 33679; Mature: 33679

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWIKNLTVFVGEEAFPCSVAELDEILDQNRCQPCGSQTERTEGFVPPLKGQDPMAYAVDG
CCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECC
FIFCTYQETARLLPGPVIKELLDEKVEHIQQEEGRKVGRKEKADLKEQITFELMPRAFTR
EEEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
SRRTSLLIDTERKRVMVDSSSASRGEEVIACLRKAIGTLPVAYPAPNSAPYTSFSNWLRD
CCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHHHH
TKLLPEGFTLGDRCELKGIKDEGAAVKFTAVDLGQEEILAHLETGMVATRINLAWQDSLE
HHCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCHHHHHHHHHCCCEEEEEEEEECCCEE
LDINDKLEIKRIKALDLLQENIDALDAEDAVAELQARISLQGKVLRDAIDSLYGYFEVNP
ECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECC
A
C
>Mature Secondary Structure
MWIKNLTVFVGEEAFPCSVAELDEILDQNRCQPCGSQTERTEGFVPPLKGQDPMAYAVDG
CCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECC
FIFCTYQETARLLPGPVIKELLDEKVEHIQQEEGRKVGRKEKADLKEQITFELMPRAFTR
EEEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
SRRTSLLIDTERKRVMVDSSSASRGEEVIACLRKAIGTLPVAYPAPNSAPYTSFSNWLRD
CCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHHHH
TKLLPEGFTLGDRCELKGIKDEGAAVKFTAVDLGQEEILAHLETGMVATRINLAWQDSLE
HHCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCHHHHHHHHHCCCEEEEEEEEECCCEE
LDINDKLEIKRIKALDLLQENIDALDAEDAVAELQARISLQGKVLRDAIDSLYGYFEVNP
ECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECC
A
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA