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The map label for this gene is degU [H]

Identifier: 110835015

GI number: 110835015

Start: 2460573

End: 2461223

Strand: Direct

Name: degU [H]

Synonym: ABO_2154

Alternate gene names: 110835015

Gene position: 2460573-2461223 (Clockwise)

Preceding gene: 110835013

Following gene: 110835021

Centisome position: 78.86

GC content: 53.92

Gene sequence:

>651_bases
ATGACAACCATACTGATTGCAGATGACCACCCTCTCTTCCGTGCGGCCTTGAAACAGGCTGTAGACACCAGTTTTTCCGG
TGCCGCCATCCACGAAGCGGACTCTCTGGCTACCCTGGAAGAGCTCGGCCAGCAAGGGATTCCTTTTGACGTCATACTTC
TGGATCTGCATATGCCCGGCACCCATGGCTTTTCCGGCCTGGTGTACCTGCGCGAGCAATACAAAAAAGTCCCCCTAGTA
GTCATTTCCGCCACCGAAGACGTGGACGTGATACAGCGGGCTATTCACTTTGGTGCCGACGGTTTTATTCCCAAATCCGC
CTCCGTGGATACCATGACCCAGGCCATGCGCAAAATCATGGATGGTGAACGCTGGTTACCGGAAAAAGCGCGCCGGGCCA
TGCCTCCCACCTTGCCTGATCACTCAGCCATGAGTGATCGGATTACCAGCCTGACACCGCAACAATTCCGTGTCATGGGC
ATGCTGATGGAAGGAATGCAAAACAAGGTTATCGCTTACGAACTGGATGTGTCAGAAGCCACGGTAAAAGCACACATGAC
CGCTATTTTTCGCAAGCTGGGCGTTCGTAATCGCACCCAGGCAGTGCTCGCATTGAAAGATCTAGCCATTGAACCGCCCG
GGCTGAACTAA

Upstream 100 bases:

>100_bases
TTTCTATTTGTCTTTCTCTGACGCTGAACGCCCTAAACAGCTTCTTTTTTCACGCCATTTTCTTTTGGGTTCTGCGCATC
AACATGCTTAAATCAGAATC

Downstream 100 bases:

>100_bases
CGGGTAAACGTTGCAGAGATGTGCATGCTAGAGGCGCAGTCACTAACGACCAGGTGCAAGATAAAATCAAACACAGCTCA
CCACCGTTGACACAAGAAAA

Product: transcriptional regulator DegU

Products: NA

Alternate protein names: Protein AgmR [H]

Number of amino acids: Translated: 216; Mature: 215

Protein sequence:

>216_residues
MTTILIADDHPLFRAALKQAVDTSFSGAAIHEADSLATLEELGQQGIPFDVILLDLHMPGTHGFSGLVYLREQYKKVPLV
VISATEDVDVIQRAIHFGADGFIPKSASVDTMTQAMRKIMDGERWLPEKARRAMPPTLPDHSAMSDRITSLTPQQFRVMG
MLMEGMQNKVIAYELDVSEATVKAHMTAIFRKLGVRNRTQAVLALKDLAIEPPGLN

Sequences:

>Translated_216_residues
MTTILIADDHPLFRAALKQAVDTSFSGAAIHEADSLATLEELGQQGIPFDVILLDLHMPGTHGFSGLVYLREQYKKVPLV
VISATEDVDVIQRAIHFGADGFIPKSASVDTMTQAMRKIMDGERWLPEKARRAMPPTLPDHSAMSDRITSLTPQQFRVMG
MLMEGMQNKVIAYELDVSEATVKAHMTAIFRKLGVRNRTQAVLALKDLAIEPPGLN
>Mature_215_residues
TTILIADDHPLFRAALKQAVDTSFSGAAIHEADSLATLEELGQQGIPFDVILLDLHMPGTHGFSGLVYLREQYKKVPLVV
ISATEDVDVIQRAIHFGADGFIPKSASVDTMTQAMRKIMDGERWLPEKARRAMPPTLPDHSAMSDRITSLTPQQFRVMGM
LMEGMQNKVIAYELDVSEATVKAHMTAIFRKLGVRNRTQAVLALKDLAIEPPGLN

Specific function: Positive activator for glycerol metabolism [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=200, Percent_Identity=30, Blast_Score=96, Evalue=1e-21,
Organism=Escherichia coli, GI1786747, Length=195, Percent_Identity=27.1794871794872, Blast_Score=88, Evalue=3e-19,
Organism=Escherichia coli, GI1787473, Length=208, Percent_Identity=31.25, Blast_Score=88, Evalue=3e-19,
Organism=Escherichia coli, GI1789937, Length=205, Percent_Identity=26.8292682926829, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788712, Length=197, Percent_Identity=24.3654822335025, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1788222, Length=201, Percent_Identity=21.3930348258706, Blast_Score=70, Evalue=7e-14,
Organism=Escherichia coli, GI1790102, Length=202, Percent_Identity=28.7128712871287, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788546, Length=214, Percent_Identity=21.9626168224299, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23808; Mature: 23677

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTILIADDHPLFRAALKQAVDTSFSGAAIHEADSLATLEELGQQGIPFDVILLDLHMPG
CEEEEEECCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECCC
THGFSGLVYLREQYKKVPLVVISATEDVDVIQRAIHFGADGFIPKSASVDTMTQAMRKIM
CCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
DGERWLPEKARRAMPPTLPDHSAMSDRITSLTPQQFRVMGMLMEGMQNKVIAYELDVSEA
CCCCCCCHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEECCCHH
TVKAHMTAIFRKLGVRNRTQAVLALKDLAIEPPGLN
HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TTILIADDHPLFRAALKQAVDTSFSGAAIHEADSLATLEELGQQGIPFDVILLDLHMPG
EEEEEECCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECCC
THGFSGLVYLREQYKKVPLVVISATEDVDVIQRAIHFGADGFIPKSASVDTMTQAMRKIM
CCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
DGERWLPEKARRAMPPTLPDHSAMSDRITSLTPQQFRVMGMLMEGMQNKVIAYELDVSEA
CCCCCCCHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEECCCHH
TVKAHMTAIFRKLGVRNRTQAVLALKDLAIEPPGLN
HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938886; 10984043 [H]