Click here to switch to the map view.

The map label for this gene is 110636356

Identifier: 110636356

GI number: 110636356

Start: 4338437

End: 4339402

Strand: Reverse

Name: 110636356

Synonym: Meso_4032

Alternate gene names: NA

Gene position: 4339402-4338437 (Counterclockwise)

Preceding gene: 110636362

Following gene: 110636354

Centisome position: 98.34

GC content: 64.39

Gene sequence:

>966_bases
ATGGAACTTCCCCCCAAGCTGCGCCAAGCTGTCGACCGGATGCTGGAGGGCACGCCTCTGGCAGAATTGCAGAGGGCCGC
CAGCCTGCTTTCCCAACGGTATCGTAGCGAGACGCGGGACGGAAGGCTGCATGTTGCCGATGCGCTGGCCGCAAAAGCCT
ATCTGGCCACTCGGCTTCCCGCGACCTATGCCGCTGTGCGCCAGGCGATGAGCGATGTGGCGGCATTAAGCGTGGAGATG
CCGAAGAGCCTTCTGGATATCGGCTGCGGGCCGGGAACGGCTCTTTGGGCAGCGCTCGATGAATGGCCGGAGCTAGAAGA
TGCCGTGCTTGTCGAGGCGAGTGCTGCCATGCAACGAGTGGGTGAGCATTTGGCGCGTGATATAGGGCCGGCGCGGCTTT
CCTGGCGCGGCGCCGCCGTGGAAGACGGTCTTCCCGGGACAGAGCCGGCGGATCTGGTAACGCTCTGCTACGTGCTGGAC
GAGTTGGCCCCTCCGGCAGCCGAAGCGCTGATTGGCCGGCTATGGGCGCTAACGAAGGGAACGCTGCTTATCGTCGAGCC
GGGAACGCCTGCGGGCTGGCGGCGCATCCTCAACGCGCGGCGGCAATTGATCGATTCCGGAGCGCGTATCATAGCGCCAT
GCGTTCATGAACTTACCTGCCCGATCGCCGAGCCTGACTGGTGCCACTTCTCCCGCCGGGTCGCCCGCTCCCGTTTGCAC
CGGCTGACAAAAGGCGGCGAGGTCCCGTGGGAGGATGAAAAGTTCATCTATCTTGCAGCTTCTCGCGCGGCCGCGAGCAT
ACGTGGAAATCGTGTGCTCGCGCCGCCGAAGGTGGCAAGCGGGATCGTTCGGTTGAAGGTCTGCAATCCCGGCGGAAAGG
TGGAGGAGCGGCTGGCCACGCGGCGAGACGGTGCAGCCTTTAAAGCAGCCAAGCGGCTTGAGTGGGGGGACATCGCCGAG
GAGTGA

Upstream 100 bases:

>100_bases
GCGGCCGCTGTATAGCGTGTTTCCCGCCGACAAGAAACGGCGTCTTGCACCAATCGTGGGCAGCGATTATTTGGCGGGCT
TCCCTGGAGCCACACCTTAT

Downstream 100 bases:

>100_bases
TGGCCCGGATCACCCCTCGATCACAAGCCGCTTAAGCTTGTAGAGAACCTCCAACGCCTCACGCGGGGTCATGTCGTCGG
GATTGAGCGCGGTAAGCTCC

Product: methyltransferase type 11

Products: NA

Alternate protein names: Methyltransferase Type; SAM Methyltransferase; Methyltransferase; rRNA Methylase; rRNA Methylase-Like Protein

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MELPPKLRQAVDRMLEGTPLAELQRAASLLSQRYRSETRDGRLHVADALAAKAYLATRLPATYAAVRQAMSDVAALSVEM
PKSLLDIGCGPGTALWAALDEWPELEDAVLVEASAAMQRVGEHLARDIGPARLSWRGAAVEDGLPGTEPADLVTLCYVLD
ELAPPAAEALIGRLWALTKGTLLIVEPGTPAGWRRILNARRQLIDSGARIIAPCVHELTCPIAEPDWCHFSRRVARSRLH
RLTKGGEVPWEDEKFIYLAASRAAASIRGNRVLAPPKVASGIVRLKVCNPGGKVEERLATRRDGAAFKAAKRLEWGDIAE
E

Sequences:

>Translated_321_residues
MELPPKLRQAVDRMLEGTPLAELQRAASLLSQRYRSETRDGRLHVADALAAKAYLATRLPATYAAVRQAMSDVAALSVEM
PKSLLDIGCGPGTALWAALDEWPELEDAVLVEASAAMQRVGEHLARDIGPARLSWRGAAVEDGLPGTEPADLVTLCYVLD
ELAPPAAEALIGRLWALTKGTLLIVEPGTPAGWRRILNARRQLIDSGARIIAPCVHELTCPIAEPDWCHFSRRVARSRLH
RLTKGGEVPWEDEKFIYLAASRAAASIRGNRVLAPPKVASGIVRLKVCNPGGKVEERLATRRDGAAFKAAKRLEWGDIAE
E
>Mature_321_residues
MELPPKLRQAVDRMLEGTPLAELQRAASLLSQRYRSETRDGRLHVADALAAKAYLATRLPATYAAVRQAMSDVAALSVEM
PKSLLDIGCGPGTALWAALDEWPELEDAVLVEASAAMQRVGEHLARDIGPARLSWRGAAVEDGLPGTEPADLVTLCYVLD
ELAPPAAEALIGRLWALTKGTLLIVEPGTPAGWRRILNARRQLIDSGARIIAPCVHELTCPIAEPDWCHFSRRVARSRLH
RLTKGGEVPWEDEKFIYLAASRAAASIRGNRVLAPPKVASGIVRLKVCNPGGKVEERLATRRDGAAFKAAKRLEWGDIAE
E

Specific function: Unknown

COG id: COG5459

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI12232389, Length=284, Percent_Identity=28.169014084507, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI71999135, Length=283, Percent_Identity=27.208480565371, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI19921026, Length=288, Percent_Identity=27.0833333333333, Blast_Score=84, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34876; Mature: 34876

Theoretical pI: Translated: 8.13; Mature: 8.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELPPKLRQAVDRMLEGTPLAELQRAASLLSQRYRSETRDGRLHVADALAAKAYLATRLP
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHCC
ATYAAVRQAMSDVAALSVEMPKSLLDIGCGPGTALWAALDEWPELEDAVLVEASAAMQRV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
GEHLARDIGPARLSWRGAAVEDGLPGTEPADLVTLCYVLDELAPPAAEALIGRLWALTKG
HHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
TLLIVEPGTPAGWRRILNARRQLIDSGARIIAPCVHELTCPIAEPDWCHFSRRVARSRLH
CEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
RLTKGGEVPWEDEKFIYLAASRAAASIRGNRVLAPPKVASGIVRLKVCNPGGKVEERLAT
HHHCCCCCCCCCCCEEEEEECHHHHHHCCCCCCCCCHHHCCEEEEEEECCCCHHHHHHHH
RRDGAAFKAAKRLEWGDIAEE
HCCCHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MELPPKLRQAVDRMLEGTPLAELQRAASLLSQRYRSETRDGRLHVADALAAKAYLATRLP
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHCC
ATYAAVRQAMSDVAALSVEMPKSLLDIGCGPGTALWAALDEWPELEDAVLVEASAAMQRV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
GEHLARDIGPARLSWRGAAVEDGLPGTEPADLVTLCYVLDELAPPAAEALIGRLWALTKG
HHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
TLLIVEPGTPAGWRRILNARRQLIDSGARIIAPCVHELTCPIAEPDWCHFSRRVARSRLH
CEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
RLTKGGEVPWEDEKFIYLAASRAAASIRGNRVLAPPKVASGIVRLKVCNPGGKVEERLAT
HHHCCCCCCCCCCCEEEEEECHHHHHHCCCCCCCCCHHHCCEEEEEEECCCCHHHHHHHH
RRDGAAFKAAKRLEWGDIAEE
HCCCHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA