Click here to switch to the map view.

The map label for this gene is yfdE [H]

Identifier: 110636075

GI number: 110636075

Start: 4051545

End: 4052762

Strand: Reverse

Name: yfdE [H]

Synonym: Meso_3750

Alternate gene names: 110636075

Gene position: 4052762-4051545 (Counterclockwise)

Preceding gene: 110636078

Following gene: 110636065

Centisome position: 91.85

GC content: 60.43

Gene sequence:

>1218_bases
ATGCAGAATCTTCTGGACGGAATACGGGTTCTGGATTTCACGCGCGTATTCGCGGGTCCAGCGGCAACTCAGGTTCTGGG
CGATCTCGGCGCCGATGTGGTCAAGATAGAGCCCCCGGCGGGCGATGAAGCTCGCTATTACGGGGTATCGGCGGAACAAT
TGGCCGAGTTGGGCATGAGCCCGTCGTTTATAGCACTCAACCGCAACAAGCGCTCTATATCGCTCGATATGCGCAACCCG
CAGGGAAAGGCTCTGGCTAAGCGGCTGGCGTTGAGCTCCGATGTAATCGTCAGCAATTTTCGCCCCGGCGTGATGGAACG
CCTGGGGCTCGGTTATGATGAGCTATCATCCGAGAACCCACGACTGATCCAGGCAGAATTCACGGCCTACGGGCGCACGG
GCGACCTCTCCGAGGTTGGCGCCAACGATCTGGCATTACAAGCATATAGCGGGCTAATCTCGGTCACGGGAGAGCCAGGG
CGGCCGCCGGTCCGCTGCGGAACTGCCGTCATCGACATGCACGGGAGTCTTGCGCTCGTCGCCGGAATCCTTGCGGCGAT
CTTGCACAGATGGAAAACCGGGCGCGGGCAGCGTGTCGACAGCTCTCTGCTGATGAGCGCCGCCCACCTGCTGGGCCATT
TCTACACCGAGTATTGGATGACGGGAATCGAGCGGAAGCCAATGGGCACCGCCAACCATTTGACGGTGCCCAACCAGGCG
TTTCCAGCGCTCGATGGCGAAGTGGTCATCATCGCTTCCACGGACGAGCAGTGGCGGCGATGCGCGCATGCTCTCGATGC
AGCGACGCTGGACGTGCCGGAGTTTGCAAGAGTTTTCGACCGCCAGCAGAACCGTGAGGCTTTGGTCGAGGCGTTATCGG
CCGTCACGCGGAAGCTAACCACTACCGAATTGGTCCGCCGACTTGGTAAGGAGAAGGTCGTCGTGGCAAAGGTGAACTCG
GTTGGCGAAGCAGCTTCATCGCCACAGCTCGCCGCGATCGGCGGACGCGTCATCTTGGAGCAGCAAGGAAAGCATGTGCC
GACCGTCGCATCGCCATTTCACATGAGCGAATTTGATCTGAGGCACGCCCGCCCCGCTCCGGCGTTAGGTCAAGATACCC
ATGCAATCCTGGCAGACTATGGCTTGGATCCTGTCGAGATCGGACGCATAGTGATGTCCGGAGCGCTGGGCGAGACCGCA
TCAACCGGCACGGACTGA

Upstream 100 bases:

>100_bases
GGCTTTGCCTGATCCGCAAAGGAATTATACCCACTCAACCAATATCGGCGCCTTCCATAAGAATGCTAGCTCGGCAGGAA
AAAGCAGGAGAAGGAGCGCT

Downstream 100 bases:

>100_bases
GTTGGAGGTGCGACCCCTACCGCTATTTCCATCTGTCGTAGAAACCCGGCCGCGAAGTCGCGCGGTCGACTTCGGGATTG
GGTGCCAACCGGTCCGTCCC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 405

Protein sequence:

>405_residues
MQNLLDGIRVLDFTRVFAGPAATQVLGDLGADVVKIEPPAGDEARYYGVSAEQLAELGMSPSFIALNRNKRSISLDMRNP
QGKALAKRLALSSDVIVSNFRPGVMERLGLGYDELSSENPRLIQAEFTAYGRTGDLSEVGANDLALQAYSGLISVTGEPG
RPPVRCGTAVIDMHGSLALVAGILAAILHRWKTGRGQRVDSSLLMSAAHLLGHFYTEYWMTGIERKPMGTANHLTVPNQA
FPALDGEVVIIASTDEQWRRCAHALDAATLDVPEFARVFDRQQNREALVEALSAVTRKLTTTELVRRLGKEKVVVAKVNS
VGEAASSPQLAAIGGRVILEQQGKHVPTVASPFHMSEFDLRHARPAPALGQDTHAILADYGLDPVEIGRIVMSGALGETA
STGTD

Sequences:

>Translated_405_residues
MQNLLDGIRVLDFTRVFAGPAATQVLGDLGADVVKIEPPAGDEARYYGVSAEQLAELGMSPSFIALNRNKRSISLDMRNP
QGKALAKRLALSSDVIVSNFRPGVMERLGLGYDELSSENPRLIQAEFTAYGRTGDLSEVGANDLALQAYSGLISVTGEPG
RPPVRCGTAVIDMHGSLALVAGILAAILHRWKTGRGQRVDSSLLMSAAHLLGHFYTEYWMTGIERKPMGTANHLTVPNQA
FPALDGEVVIIASTDEQWRRCAHALDAATLDVPEFARVFDRQQNREALVEALSAVTRKLTTTELVRRLGKEKVVVAKVNS
VGEAASSPQLAAIGGRVILEQQGKHVPTVASPFHMSEFDLRHARPAPALGQDTHAILADYGLDPVEIGRIVMSGALGETA
STGTD
>Mature_405_residues
MQNLLDGIRVLDFTRVFAGPAATQVLGDLGADVVKIEPPAGDEARYYGVSAEQLAELGMSPSFIALNRNKRSISLDMRNP
QGKALAKRLALSSDVIVSNFRPGVMERLGLGYDELSSENPRLIQAEFTAYGRTGDLSEVGANDLALQAYSGLISVTGEPG
RPPVRCGTAVIDMHGSLALVAGILAAILHRWKTGRGQRVDSSLLMSAAHLLGHFYTEYWMTGIERKPMGTANHLTVPNQA
FPALDGEVVIIASTDEQWRRCAHALDAATLDVPEFARVFDRQQNREALVEALSAVTRKLTTTELVRRLGKEKVVVAKVNS
VGEAASSPQLAAIGGRVILEQQGKHVPTVASPFHMSEFDLRHARPAPALGQDTHAILADYGLDPVEIGRIVMSGALGETA
STGTD

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=409, Percent_Identity=33.7408312958435, Blast_Score=220, Evalue=1e-57,
Organism=Homo sapiens, GI300863124, Length=433, Percent_Identity=32.1016166281755, Blast_Score=212, Evalue=5e-55,
Organism=Homo sapiens, GI300863126, Length=409, Percent_Identity=30.3178484107579, Blast_Score=171, Evalue=8e-43,
Organism=Homo sapiens, GI13376042, Length=433, Percent_Identity=28.8683602771363, Blast_Score=166, Evalue=4e-41,
Organism=Homo sapiens, GI266456254, Length=388, Percent_Identity=26.8041237113402, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI42794625, Length=388, Percent_Identity=26.8041237113402, Blast_Score=123, Evalue=2e-28,
Organism=Homo sapiens, GI266458393, Length=212, Percent_Identity=34.4339622641509, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI266458397, Length=207, Percent_Identity=35.2657004830918, Blast_Score=120, Evalue=3e-27,
Organism=Homo sapiens, GI266458395, Length=147, Percent_Identity=37.4149659863946, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI42822893, Length=147, Percent_Identity=37.4149659863946, Blast_Score=94, Evalue=2e-19,
Organism=Escherichia coli, GI87082093, Length=366, Percent_Identity=32.2404371584699, Blast_Score=187, Evalue=1e-48,
Organism=Escherichia coli, GI1788717, Length=431, Percent_Identity=30.3944315545244, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1786222, Length=407, Percent_Identity=24.8157248157248, Blast_Score=79, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI32564160, Length=223, Percent_Identity=29.1479820627803, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI115535051, Length=222, Percent_Identity=27.9279279279279, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24648431, Length=390, Percent_Identity=35.8974358974359, Blast_Score=204, Evalue=1e-52,
Organism=Drosophila melanogaster, GI24585488, Length=212, Percent_Identity=33.9622641509434, Blast_Score=122, Evalue=5e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43450; Mature: 43450

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNLLDGIRVLDFTRVFAGPAATQVLGDLGADVVKIEPPAGDEARYYGVSAEQLAELGMS
CCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEECCCCCCCCEEECCCHHHHHHCCCC
PSFIALNRNKRSISLDMRNPQGKALAKRLALSSDVIVSNFRPGVMERLGLGYDELSSENP
CCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCHHHHCCCCHHHHHHCCCHHHHCCCCC
RLIQAEFTAYGRTGDLSEVGANDLALQAYSGLISVTGEPGRPPVRCGTAVIDMHGSLALV
CEEEEEEEECCCCCCHHHCCCCHHHHHHHCCEEEECCCCCCCCHHHCCEEEECCCHHHHH
AGILAAILHRWKTGRGQRVDSSLLMSAAHLLGHFYTEYWMTGIERKPMGTANHLTVPNQA
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
FPALDGEVVIIASTDEQWRRCAHALDAATLDVPEFARVFDRQQNREALVEALSAVTRKLT
CCCCCCCEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
TTELVRRLGKEKVVVAKVNSVGEAASSPQLAAIGGRVILEQQGKHVPTVASPFHMSEFDL
HHHHHHHHCCCCEEEEECCCCCCCCCCCCEEECCCEEEEECCCCCCCCCCCCCCCCHHHH
RHARPAPALGQDTHAILADYGLDPVEIGRIVMSGALGETASTGTD
HHCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MQNLLDGIRVLDFTRVFAGPAATQVLGDLGADVVKIEPPAGDEARYYGVSAEQLAELGMS
CCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEECCCCCCCCEEECCCHHHHHHCCCC
PSFIALNRNKRSISLDMRNPQGKALAKRLALSSDVIVSNFRPGVMERLGLGYDELSSENP
CCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCHHHHCCCCHHHHHHCCCHHHHCCCCC
RLIQAEFTAYGRTGDLSEVGANDLALQAYSGLISVTGEPGRPPVRCGTAVIDMHGSLALV
CEEEEEEEECCCCCCHHHCCCCHHHHHHHCCEEEECCCCCCCCHHHCCEEEECCCHHHHH
AGILAAILHRWKTGRGQRVDSSLLMSAAHLLGHFYTEYWMTGIERKPMGTANHLTVPNQA
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
FPALDGEVVIIASTDEQWRRCAHALDAATLDVPEFARVFDRQQNREALVEALSAVTRKLT
CCCCCCCEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
TTELVRRLGKEKVVVAKVNSVGEAASSPQLAAIGGRVILEQQGKHVPTVASPFHMSEFDL
HHHHHHHHCCCCEEEEECCCCCCCCCCCCEEECCCEEEEECCCCCCCCCCCCCCCCHHHH
RHARPAPALGQDTHAILADYGLDPVEIGRIVMSGALGETASTGTD
HHCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]