| Definition | Mesorhizobium sp. BNC1, complete genome. |
|---|---|
| Accession | NC_008254 |
| Length | 4,412,446 |
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The map label for this gene is glyS [H]
Identifier: 110633071
GI number: 110633071
Start: 787929
End: 790298
Strand: Direct
Name: glyS [H]
Synonym: Meso_0714
Alternate gene names: 110633071
Gene position: 787929-790298 (Clockwise)
Preceding gene: 110633070
Following gene: 110633072
Centisome position: 17.86
GC content: 62.57
Gene sequence:
>2370_bases ATGTTTCCAATTCCGTTACAAAAAGGTTTCAGCGGCCGGTCGAGTTTGCTATTGCCCGCGCGAGCCCGCACACGAGAACA ATCCATGCCCGACCTTCTTCTTGAACTTCGCAGCGAAGAAATCCCCGCCCGCATGCAGCGCAAGGCGGCGGGCGACCTGA AGAAGCTCGTGACCGACGGTCTGGTGGAAGCGGGCCTCACTTATGAGGCGGCGACCGAATACTGGACCCCCCGCCGCCTG GCGCTCGATATCCGCGGCGTCACCGCCCGCTCCCGTGATGTGCGTGAGGAGATCAAGGGGCCGTCGACCAGCGCGCCGGA ACAGGCGATACAAGGCTTCCTCCGCAAGGCCGGCCTCACTGATATTGCCCAGGCGCACGTGCACACCGACCCCAAGAAGG GTGGGTTTTACGTCGCGGTGATCGAAAAGAATGGCAGGCCGGCCGAGGAGATCATCGCCGAGCTGATGCCTGCCGTCATC CGCAATTTTCCATGGCCCAAATCCATGCGCTGGGGCAAGGCCTCCCGCAATCCCGGCAGCTTGCGCTGGGTGCGCCCGCT TCAATCCATCGTCTGCACCTTTGGCCCGGAAACGGAAGAGCCGGTGGTGGTCGATTTCGAGATCGACGGCATCCGCGCGG GCAACGTCACCTATGGTCATCGCTTCCACGCGCCTGAAGCCATCACCGTGCGCCGCTTCGACGACTATGTGGAGAAGCTG GAGCAGGCGAAGGTCGTGCTCGACGCCGAGCGGCGCAAGCGCATCATCCTGGACGATGCGAAGAACCTCGCCTTCGCCAA CGGCCTTGAGCTGGTCGAGGACGAGGGGCTTCTGGAAGAGGTTTCCGGCCTTGTTGAGTACCCGGTCGTACTGATGGGAG AATTCGAGGAGGCTTATCTGGAGATCCCGGCCGAGGTCGTCCGCCTGACCATCCGCGCCAATCAGAAATGTTTTGTCACG CGGCCGCAAGGTGAGCTGGAAAAGCTCTCCAACCGCTTCATTATCACGGCCAATATCGAGGCCACGGACGGCGGCAAGGA GATCGCCTACGGCAACGGCAAGGTTGTGCGCGCGCGCCTGTCCGACGCGCTCTACTTCTGGAAGACGGACCAGGCCGACC TGCCGGACATCGACCGGCTGAAAGGCTCGGCAGAGAAATTTGGCCTCGACCTGAACAAGCCGCTCGACCAGCGCATGGCG CGGCTCGAACATCTGAACGTTACCTTCCATGCCAAGCTTGGCACCCAAGGCGAGCGGGTTGAGCGCATCCGCCGGTTGGC GCGCGAACTTGCTCCGATTGTGGGCGCGGACCCGGATCTGGCCGAGCGCGCGGCGGTGCTCGCCAAGGCGGACCTTACGA CCGAGGTGGTGGGCGAGTTCCCCGAGCTTCAGGGCGCCATGGGCCGCAAATATGCCGAGCTCCAGGGCGAGCACCCGTCT GTCGCCCGCGCTCTTGAAGAGCATTATAAGCCGCTCGGCCCATCCGACATCGTGCCGACCGATCCGGTTTCCGTGGCCGT GGCACTCGCCGACAAGCTCGACACGCTTGTGGGCTTCTGGGCTATCGACGAGAAGCCGACGGGCTCGAAGGACCCCTACG CCCTTCGCCGCGCTGCCTTGGGCGTGATCAGGATTGTGGTGGAGAATGGGGTAAGGCTGGCGCTTTTGAAAGCGTTCCGC AAAGCTAGGAATGTGAGCGCCGAGAATACGGAAGACCTCCTCTCTTTCTTCCATGACCGGCTGAAGGTTTATCTCCGCGA TCAAGGTGCCCGGCACGATCTCATCGACGCGGTGCTGGCGAGTGGCCGCCCGATCTCCCCCCTTGAGGGGGAGATGTCGC CGAAGGCGACAGAGGGGGGCGCTGTCCCGCCAACATCTCAGTCTGTCACACCCCCCTCTGCCCTGCCGGGCATCTCCCCC TCAAGGGGGGAGATCACGCCTTCATCCAACGATGACCTCCTCCTGATCGTCCGCCGCGTGGAAGCGCTTTCCGATCTCTT GGGCACGGAGACGGGCCAGAACCTGCTCGCGGGCACCAAGCGCGCGGCCAATATTCTCGCGGCCGAGGAGAAGAAGGGTA CCCGGATTGCGGAAGCCGTCGATCCCGCGCTTCTCAAGGAAGAGCAGGAAATCAGGCTTTTCAGCGCGGTGAATCAGGCC GAGAAGGAAGCCGGCGAAGCGATTCAGAAACAAGACTTTTCCGCCGCCATGACGGCGCTTGCCGCGCTTCGCGAGCCGAT TGATTCATTCTTTGAAAAAGTCCTCGTAAATGACGAGAATGATTCAATTCGCGCAAATCGCCTGGCGCTCCTGCAGCGCA TTCGCGAGGCGACCGGCCGGGTGGCGGATTTCTCGAAGATCGCTGGCTGA
Upstream 100 bases:
>100_bases TTGGGGTTGAGTGATTTCGCTCCAAGGACGGACGATCGCCCGCCGATCCGACACGGAAGGCAACGTTTCTTTTGATTCGG CTGTATCGTAAGCGTTTCCG
Downstream 100 bases:
>100_bases AGCAGGGTTCTATCCATGCAAAGCCTTGCTCCCGGCCTTCCATCGGGATAGGCACCCTGGAAGGTAAAGGGAAAAGAGCA TGGCCGAAATTCTGCGTGAG
Product: glycyl-tRNA synthetase subunit beta
Products: NA
Alternate protein names: Glycine--tRNA ligase beta subunit; GlyRS [H]
Number of amino acids: Translated: 789; Mature: 789
Protein sequence:
>789_residues MFPIPLQKGFSGRSSLLLPARARTREQSMPDLLLELRSEEIPARMQRKAAGDLKKLVTDGLVEAGLTYEAATEYWTPRRL ALDIRGVTARSRDVREEIKGPSTSAPEQAIQGFLRKAGLTDIAQAHVHTDPKKGGFYVAVIEKNGRPAEEIIAELMPAVI RNFPWPKSMRWGKASRNPGSLRWVRPLQSIVCTFGPETEEPVVVDFEIDGIRAGNVTYGHRFHAPEAITVRRFDDYVEKL EQAKVVLDAERRKRIILDDAKNLAFANGLELVEDEGLLEEVSGLVEYPVVLMGEFEEAYLEIPAEVVRLTIRANQKCFVT RPQGELEKLSNRFIITANIEATDGGKEIAYGNGKVVRARLSDALYFWKTDQADLPDIDRLKGSAEKFGLDLNKPLDQRMA RLEHLNVTFHAKLGTQGERVERIRRLARELAPIVGADPDLAERAAVLAKADLTTEVVGEFPELQGAMGRKYAELQGEHPS VARALEEHYKPLGPSDIVPTDPVSVAVALADKLDTLVGFWAIDEKPTGSKDPYALRRAALGVIRIVVENGVRLALLKAFR KARNVSAENTEDLLSFFHDRLKVYLRDQGARHDLIDAVLASGRPISPLEGEMSPKATEGGAVPPTSQSVTPPSALPGISP SRGEITPSSNDDLLLIVRRVEALSDLLGTETGQNLLAGTKRAANILAAEEKKGTRIAEAVDPALLKEEQEIRLFSAVNQA EKEAGEAIQKQDFSAAMTALAALREPIDSFFEKVLVNDENDSIRANRLALLQRIREATGRVADFSKIAG
Sequences:
>Translated_789_residues MFPIPLQKGFSGRSSLLLPARARTREQSMPDLLLELRSEEIPARMQRKAAGDLKKLVTDGLVEAGLTYEAATEYWTPRRL ALDIRGVTARSRDVREEIKGPSTSAPEQAIQGFLRKAGLTDIAQAHVHTDPKKGGFYVAVIEKNGRPAEEIIAELMPAVI RNFPWPKSMRWGKASRNPGSLRWVRPLQSIVCTFGPETEEPVVVDFEIDGIRAGNVTYGHRFHAPEAITVRRFDDYVEKL EQAKVVLDAERRKRIILDDAKNLAFANGLELVEDEGLLEEVSGLVEYPVVLMGEFEEAYLEIPAEVVRLTIRANQKCFVT RPQGELEKLSNRFIITANIEATDGGKEIAYGNGKVVRARLSDALYFWKTDQADLPDIDRLKGSAEKFGLDLNKPLDQRMA RLEHLNVTFHAKLGTQGERVERIRRLARELAPIVGADPDLAERAAVLAKADLTTEVVGEFPELQGAMGRKYAELQGEHPS VARALEEHYKPLGPSDIVPTDPVSVAVALADKLDTLVGFWAIDEKPTGSKDPYALRRAALGVIRIVVENGVRLALLKAFR KARNVSAENTEDLLSFFHDRLKVYLRDQGARHDLIDAVLASGRPISPLEGEMSPKATEGGAVPPTSQSVTPPSALPGISP SRGEITPSSNDDLLLIVRRVEALSDLLGTETGQNLLAGTKRAANILAAEEKKGTRIAEAVDPALLKEEQEIRLFSAVNQA EKEAGEAIQKQDFSAAMTALAALREPIDSFFEKVLVNDENDSIRANRLALLQRIREATGRVADFSKIAG >Mature_789_residues MFPIPLQKGFSGRSSLLLPARARTREQSMPDLLLELRSEEIPARMQRKAAGDLKKLVTDGLVEAGLTYEAATEYWTPRRL ALDIRGVTARSRDVREEIKGPSTSAPEQAIQGFLRKAGLTDIAQAHVHTDPKKGGFYVAVIEKNGRPAEEIIAELMPAVI RNFPWPKSMRWGKASRNPGSLRWVRPLQSIVCTFGPETEEPVVVDFEIDGIRAGNVTYGHRFHAPEAITVRRFDDYVEKL EQAKVVLDAERRKRIILDDAKNLAFANGLELVEDEGLLEEVSGLVEYPVVLMGEFEEAYLEIPAEVVRLTIRANQKCFVT RPQGELEKLSNRFIITANIEATDGGKEIAYGNGKVVRARLSDALYFWKTDQADLPDIDRLKGSAEKFGLDLNKPLDQRMA RLEHLNVTFHAKLGTQGERVERIRRLARELAPIVGADPDLAERAAVLAKADLTTEVVGEFPELQGAMGRKYAELQGEHPS VARALEEHYKPLGPSDIVPTDPVSVAVALADKLDTLVGFWAIDEKPTGSKDPYALRRAALGVIRIVVENGVRLALLKAFR KARNVSAENTEDLLSFFHDRLKVYLRDQGARHDLIDAVLASGRPISPLEGEMSPKATEGGAVPPTSQSVTPPSALPGISP SRGEITPSSNDDLLLIVRRVEALSDLLGTETGQNLLAGTKRAANILAAEEKKGTRIAEAVDPALLKEEQEIRLFSAVNQA EKEAGEAIQKQDFSAAMTALAALREPIDSFFEKVLVNDENDSIRANRLALLQRIREATGRVADFSKIAG
Specific function: Unknown
COG id: COG0751
COG function: function code J; Glycyl-tRNA synthetase, beta subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Escherichia coli, GI1789982, Length=769, Percent_Identity=33.5500650195059, Blast_Score=346, Evalue=3e-96,
Paralogues:
None
Copy number: 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 400 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008909 - InterPro: IPR006194 - InterPro: IPR015944 - InterPro: IPR002311 [H]
Pfam domain/function: PF05746 DALR_1; PF02092 tRNA_synt_2f [H]
EC number: =6.1.1.14 [H]
Molecular weight: Translated: 86874; Mature: 86874
Theoretical pI: Translated: 5.72; Mature: 5.72
Prosite motif: PS50861 AA_TRNA_LIGASE_II_GLYAB
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFPIPLQKGFSGRSSLLLPARARTREQSMPDLLLELRSEEIPARMQRKAAGDLKKLVTDG CCCCCCCCCCCCCCCEEECCHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH LVEAGLTYEAATEYWTPRRLALDIRGVTARSRDVREEIKGPSTSAPEQAIQGFLRKAGLT HHHCCCCHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCH DIAQAHVHTDPKKGGFYVAVIEKNGRPAEEIIAELMPAVIRNFPWPKSMRWGKASRNPGS HHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC LRWVRPLQSIVCTFGPETEEPVVVDFEIDGIRAGNVTYGHRFHAPEAITVRRFDDYVEKL CHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEECCCCCCCEECCCCEEEHHHHHHHHHHH EQAKVVLDAERRKRIILDDAKNLAFANGLELVEDEGLLEEVSGLVEYPVVLMGEFEEAYL HHHHHHHHHHHCCEEEEECCCCHHHHCCCHHHCCCCHHHHHHHHHHCCHHEECCHHHHHH EIPAEVVRLTIRANQKCFVTRPQGELEKLSNRFIITANIEATDGGKEIAYGNGKVVRARL HCCHHHHEEHEECCCEEEEECCCHHHHHHCCCEEEEEEEEECCCCCEEEECCCCEEEEEH SDALYFWKTDQADLPDIDRLKGSAEKFGLDLNKPLDQRMARLEHLNVTFHAKLGTQGERV HCCEEEEECCCCCCCCHHHHCCCHHHHCCCCCCCHHHHHHHHHHCCEEEEEECCCCHHHH ERIRRLARELAPIVGADPDLAERAAVLAKADLTTEVVGEFPELQGAMGRKYAELQGEHPS HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHCCHHHHHHHCCHHHHHCCCCHH VARALEEHYKPLGPSDIVPTDPVSVAVALADKLDTLVGFWAIDEKPTGSKDPYALRRAAL HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHH GVIRIVVENGVRLALLKAFRKARNVSAENTEDLLSFFHDRLKVYLRDQGARHDLIDAVLA HHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH SGRPISPLEGEMSPKATEGGAVPPTSQSVTPPSALPGISPSRGEITPSSNDDLLLIVRRV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHH EALSDLLGTETGQNLLAGTKRAANILAAEEKKGTRIAEAVDPALLKEEQEIRLFSAVNQA HHHHHHHCCCCCCHHHHCCHHHHHHHHHHHCCCCHHHHHHCHHHHCCHHHHHHHHHHHHH EKEAGEAIQKQDFSAAMTALAALREPIDSFFEKVLVNDENDSIRANRLALLQRIREATGR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC VADFSKIAG HHHHHHHCC >Mature Secondary Structure MFPIPLQKGFSGRSSLLLPARARTREQSMPDLLLELRSEEIPARMQRKAAGDLKKLVTDG CCCCCCCCCCCCCCCEEECCHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH LVEAGLTYEAATEYWTPRRLALDIRGVTARSRDVREEIKGPSTSAPEQAIQGFLRKAGLT HHHCCCCHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCH DIAQAHVHTDPKKGGFYVAVIEKNGRPAEEIIAELMPAVIRNFPWPKSMRWGKASRNPGS HHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC LRWVRPLQSIVCTFGPETEEPVVVDFEIDGIRAGNVTYGHRFHAPEAITVRRFDDYVEKL CHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEECCCCCCCEECCCCEEEHHHHHHHHHHH EQAKVVLDAERRKRIILDDAKNLAFANGLELVEDEGLLEEVSGLVEYPVVLMGEFEEAYL HHHHHHHHHHHCCEEEEECCCCHHHHCCCHHHCCCCHHHHHHHHHHCCHHEECCHHHHHH EIPAEVVRLTIRANQKCFVTRPQGELEKLSNRFIITANIEATDGGKEIAYGNGKVVRARL HCCHHHHEEHEECCCEEEEECCCHHHHHHCCCEEEEEEEEECCCCCEEEECCCCEEEEEH SDALYFWKTDQADLPDIDRLKGSAEKFGLDLNKPLDQRMARLEHLNVTFHAKLGTQGERV HCCEEEEECCCCCCCCHHHHCCCHHHHCCCCCCCHHHHHHHHHHCCEEEEEECCCCHHHH ERIRRLARELAPIVGADPDLAERAAVLAKADLTTEVVGEFPELQGAMGRKYAELQGEHPS HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHCCHHHHHHHCCHHHHHCCCCHH VARALEEHYKPLGPSDIVPTDPVSVAVALADKLDTLVGFWAIDEKPTGSKDPYALRRAAL HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHH GVIRIVVENGVRLALLKAFRKARNVSAENTEDLLSFFHDRLKVYLRDQGARHDLIDAVLA HHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH SGRPISPLEGEMSPKATEGGAVPPTSQSVTPPSALPGISPSRGEITPSSNDDLLLIVRRV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHH EALSDLLGTETGQNLLAGTKRAANILAAEEKKGTRIAEAVDPALLKEEQEIRLFSAVNQA HHHHHHHCCCCCCHHHHCCHHHHHHHHHHHCCCCHHHHHHCHHHHCCHHHHHHHHHHHHH EKEAGEAIQKQDFSAAMTALAALREPIDSFFEKVLVNDENDSIRANRLALLQRIREATGR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC VADFSKIAG HHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11214968 [H]