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The map label for this gene is ygaU [C]

Identifier: 110633069

GI number: 110633069

Start: 784426

End: 786459

Strand: Direct

Name: ygaU [C]

Synonym: Meso_0712

Alternate gene names: 110633069

Gene position: 784426-786459 (Clockwise)

Preceding gene: 110633068

Following gene: 110633070

Centisome position: 17.78

GC content: 62.39

Gene sequence:

>2034_bases
ATGCGGCTAACCAGGGCAACACTTAAAGCGACGGCGGCACTCGCGGTCTTCATGGCATTTTCCGCGCAGGCCGGGGTCGC
CAAGGAAACTGGGGATACGGCCGGCCCGGTTCAGACCCTCACTTTCTCGGGTGCTTATCTGGCAGGGCGAGCGGCCGAGT
TTGACGACGACCTGAAGAGCGCTGTGACCTATTACGAGCGCGCGCTCTCGCTCGATCCCGACAATACGGATCTGCAGCGC
ACTTTGCTGCTGGCGCTGGTATCGCAAGGCGAGGTGGACAAGGCGCTTCCCTACGCGGACAAGCTGAAAGCCGTTCCGGA
GGTGGAGCGCTTCTCCCGCCTCACGCTTGCGGTCGATTCGTTCCGCAAGAACGATTTTGCTGCGGCCGAGCGCTGGTTGA
ACCTCGTTCTGGAATCGGATCTCGACCGCCTCATTACCGGCATCATGACGAGCTGGGCGAAGGTGGGGCAGGGCGATGCG
GACGGCGGGCTCACGAGCCTGGAGAATCTGAGCGGCCCGCCGTGGTATGAGCTGTTCAAGGCCTATCACCGTGCGCTCAT
TCTGGCCAATGAGGGGCGTACCGAAGAGGCGGATGCAGCCTTCGACCAGGTGATCAGCGAGCTTGCTCCACGCTCTGTGG
CGCCGGACACTCTTGGCCGGCTCGCCGAGGTCTATGCCTCCTATTTGTCGAGCCGCGGCGAGAAGGAGCGTGCGCTTGCT
GTCCTCCAGCAGGCAGAGGAGACTGGCGGCGGTATCGCGACCATTCCGGAACTTCGCGCCAAACTGGAAACTGGCGGGAA
GCTCGATTCGGTCGTGGCGAACGCCTCGGATGGAGCGGCCGAGATCCTGCTCAATGTCGCCACCGAGCTCGCGAGCGGTG
GTGGTGATTCCTATGTCCGTGTCTATCTGCAGCTTGCTCGTGCGCTGCGCCCGCATGGCGACGCCGTTCTCGTGCAGCTT
GCCCATGTTGCCGAGCGGCAGCAGGATGGCGAAGGGGCGATCGCGATCTATCGCATGATCGAAAAGGATTCTCCCTGGAC
GCGCTTTGCGGAATTTCAGATCGGCCTCAACCTGGCCGACCTTGAGCGGAACGATGAAGCGGTCGCGCATCTGAAGAAGG
TTTTGGAAGCCGACCCCAAGGACCTGCGCGCCTATCTCGCCCTGGGCGGCGTCTATTCCAGCCAGAAGAACTACAAGGCG
GCCGCCGAACTCTACGATGATGCAGTGGCTGAAATTCCGGAGCCGGGGCGCGAGCACTGGAACATCTTCTATCAGCGCGG
CATCGCCTATGAGCGGCTTAAGGAGTGGCCCAAGGCCGAACCCAATTTCAAGAAGGCGCTGGAGCTTTATCCCGATCATC
CCCAGGTGCTGAATTATCTCGGCTATTCCTGGATCGACATGAACATGAACCTCGAAGAGGGCATGGAACTGATCAAAAAG
GCGGTGGAGCTGCGGCCAAGTGACGGCTACATCGTCGATTCGCTCGGCTGGGCCTATTACAAGCTCGGCCAGTACGACGA
AGCGGTGGAGCATCTGGAACGGGCGGTTTCCTTGCGTCCGGAAGATGCGGTCCTGAACGACCATCTGGGCGACGTTTATT
GGCGCGTCGGCCGCCATCTCGAAGCGCGCTATCAATGGTCGCAGGTAAAGACCCTTGAGCCTGAGCCCGACCTTCTGGCC
CAGATCGAGGAGAAGTTGAAGAACGGCCTGCCGCCCGTGGATGGCGAGAAGGTGGCTGACGCTGCAGGCAACGCACGCAC
CGTCAGCGACGGCGCGCCCTCCGAGCCTGCCCGGCAGCCGGAGCAGCCGCAGGCCCAGCCGGCCGCGCCCGCTGAGCCCG
CGCAAGGCGCAACTGCCGAGACGGAGGCTACCTATAGGGTAAAGCCCGGCCAGTCCCTCTGGTCGATCGCCGTCGAGGAA
CTGGGCAATGGCGAACGCTTTCGCGAGATTCTCGATTTGAACCCGGTCCTGAGGGGTGATCCCAACCGCATCAGGCCTGG
CCTGGAACTGAAGCTGCCGACAGCGGGGCAGTAG

Upstream 100 bases:

>100_bases
TTGGTTCTCTATTTACGATTGCGGCACCATCGTAAAAAGGCCATCCTCTGCGGCTAGCAGGTTTCCGCAAGGGAAGGGCC
GAACCGACGGAAGGGACAGC

Downstream 100 bases:

>100_bases
CCAAAGGCCACAGGACGATAGCTTAGGTTTCTGCCCTACGTTGCCACCCTTCTGCCCTGTAGGACAGATGGGCGCGCGAA
GGGCTCGGCTTCACAAGTGA

Product: tetratricopeptide TPR_2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 677; Mature: 677

Protein sequence:

>677_residues
MRLTRATLKATAALAVFMAFSAQAGVAKETGDTAGPVQTLTFSGAYLAGRAAEFDDDLKSAVTYYERALSLDPDNTDLQR
TLLLALVSQGEVDKALPYADKLKAVPEVERFSRLTLAVDSFRKNDFAAAERWLNLVLESDLDRLITGIMTSWAKVGQGDA
DGGLTSLENLSGPPWYELFKAYHRALILANEGRTEEADAAFDQVISELAPRSVAPDTLGRLAEVYASYLSSRGEKERALA
VLQQAEETGGGIATIPELRAKLETGGKLDSVVANASDGAAEILLNVATELASGGGDSYVRVYLQLARALRPHGDAVLVQL
AHVAERQQDGEGAIAIYRMIEKDSPWTRFAEFQIGLNLADLERNDEAVAHLKKVLEADPKDLRAYLALGGVYSSQKNYKA
AAELYDDAVAEIPEPGREHWNIFYQRGIAYERLKEWPKAEPNFKKALELYPDHPQVLNYLGYSWIDMNMNLEEGMELIKK
AVELRPSDGYIVDSLGWAYYKLGQYDEAVEHLERAVSLRPEDAVLNDHLGDVYWRVGRHLEARYQWSQVKTLEPEPDLLA
QIEEKLKNGLPPVDGEKVADAAGNARTVSDGAPSEPARQPEQPQAQPAAPAEPAQGATAETEATYRVKPGQSLWSIAVEE
LGNGERFREILDLNPVLRGDPNRIRPGLELKLPTAGQ

Sequences:

>Translated_677_residues
MRLTRATLKATAALAVFMAFSAQAGVAKETGDTAGPVQTLTFSGAYLAGRAAEFDDDLKSAVTYYERALSLDPDNTDLQR
TLLLALVSQGEVDKALPYADKLKAVPEVERFSRLTLAVDSFRKNDFAAAERWLNLVLESDLDRLITGIMTSWAKVGQGDA
DGGLTSLENLSGPPWYELFKAYHRALILANEGRTEEADAAFDQVISELAPRSVAPDTLGRLAEVYASYLSSRGEKERALA
VLQQAEETGGGIATIPELRAKLETGGKLDSVVANASDGAAEILLNVATELASGGGDSYVRVYLQLARALRPHGDAVLVQL
AHVAERQQDGEGAIAIYRMIEKDSPWTRFAEFQIGLNLADLERNDEAVAHLKKVLEADPKDLRAYLALGGVYSSQKNYKA
AAELYDDAVAEIPEPGREHWNIFYQRGIAYERLKEWPKAEPNFKKALELYPDHPQVLNYLGYSWIDMNMNLEEGMELIKK
AVELRPSDGYIVDSLGWAYYKLGQYDEAVEHLERAVSLRPEDAVLNDHLGDVYWRVGRHLEARYQWSQVKTLEPEPDLLA
QIEEKLKNGLPPVDGEKVADAAGNARTVSDGAPSEPARQPEQPQAQPAAPAEPAQGATAETEATYRVKPGQSLWSIAVEE
LGNGERFREILDLNPVLRGDPNRIRPGLELKLPTAGQ
>Mature_677_residues
MRLTRATLKATAALAVFMAFSAQAGVAKETGDTAGPVQTLTFSGAYLAGRAAEFDDDLKSAVTYYERALSLDPDNTDLQR
TLLLALVSQGEVDKALPYADKLKAVPEVERFSRLTLAVDSFRKNDFAAAERWLNLVLESDLDRLITGIMTSWAKVGQGDA
DGGLTSLENLSGPPWYELFKAYHRALILANEGRTEEADAAFDQVISELAPRSVAPDTLGRLAEVYASYLSSRGEKERALA
VLQQAEETGGGIATIPELRAKLETGGKLDSVVANASDGAAEILLNVATELASGGGDSYVRVYLQLARALRPHGDAVLVQL
AHVAERQQDGEGAIAIYRMIEKDSPWTRFAEFQIGLNLADLERNDEAVAHLKKVLEADPKDLRAYLALGGVYSSQKNYKA
AAELYDDAVAEIPEPGREHWNIFYQRGIAYERLKEWPKAEPNFKKALELYPDHPQVLNYLGYSWIDMNMNLEEGMELIKK
AVELRPSDGYIVDSLGWAYYKLGQYDEAVEHLERAVSLRPEDAVLNDHLGDVYWRVGRHLEARYQWSQVKTLEPEPDLLA
QIEEKLKNGLPPVDGEKVADAAGNARTVSDGAPSEPARQPEQPQAQPAAPAEPAQGATAETEATYRVKPGQSLWSIAVEE
LGNGERFREILDLNPVLRGDPNRIRPGLELKLPTAGQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 5 TPR repeats [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6319387, Length=200, Percent_Identity=26.5, Blast_Score=67, Evalue=9e-12,
Organism=Saccharomyces cerevisiae, GI6319589, Length=196, Percent_Identity=25.5102040816327, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24659892, Length=216, Percent_Identity=24.0740740740741, Blast_Score=67, Evalue=6e-11,
Organism=Drosophila melanogaster, GI161076610, Length=318, Percent_Identity=24.8427672955975, Blast_Score=66, Evalue=9e-11,

Paralogues:

None

Copy number: 4340 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011717
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR013105
- InterPro:   IPR019734 [H]

Pfam domain/function: PF07719 TPR_2; PF07721 TPR_4 [H]

EC number: NA

Molecular weight: Translated: 74367; Mature: 74367

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLTRATLKATAALAVFMAFSAQAGVAKETGDTAGPVQTLTFSGAYLAGRAAEFDDDLKS
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCHHHHCCCCCCHHHHHH
AVTYYERALSLDPDNTDLQRTLLLALVSQGEVDKALPYADKLKAVPEVERFSRLTLAVDS
HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHCCCHHHHHCCCHHHHHHHHHHHHHH
FRKNDFAAAERWLNLVLESDLDRLITGIMTSWAKVGQGDADGGLTSLENLSGPPWYELFK
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCHHHHHH
AYHRALILANEGRTEEADAAFDQVISELAPRSVAPDTLGRLAEVYASYLSSRGEKERALA
HHHHEEEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
VLQQAEETGGGIATIPELRAKLETGGKLDSVVANASDGAAEILLNVATELASGGGDSYVR
HHHHHHHCCCCEEECHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHH
VYLQLARALRPHGDAVLVQLAHVAERQQDGEGAIAIYRMIEKDSPWTRFAEFQIGLNLAD
HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCHHH
LERNDEAVAHLKKVLEADPKDLRAYLALGGVYSSQKNYKAAAELYDDAVAEIPEPGREHW
CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHH
NIFYQRGIAYERLKEWPKAEPNFKKALELYPDHPQVLNYLGYSWIDMNMNLEEGMELIKK
HHHHHHCCHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHH
AVELRPSDGYIVDSLGWAYYKLGQYDEAVEHLERAVSLRPEDAVLNDHLGDVYWRVGRHL
HHHCCCCCCEEEECCCHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
EARYQWSQVKTLEPEPDLLAQIEEKLKNGLPPVDGEKVADAAGNARTVSDGAPSEPARQP
HHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCEECCCCCCCCCCCCC
EQPQAQPAAPAEPAQGATAETEATYRVKPGQSLWSIAVEELGNGERFREILDLNPVLRGD
CCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCC
PNRIRPGLELKLPTAGQ
CCCCCCCCEEECCCCCC
>Mature Secondary Structure
MRLTRATLKATAALAVFMAFSAQAGVAKETGDTAGPVQTLTFSGAYLAGRAAEFDDDLKS
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCHHHHCCCCCCHHHHHH
AVTYYERALSLDPDNTDLQRTLLLALVSQGEVDKALPYADKLKAVPEVERFSRLTLAVDS
HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHCCCHHHHHCCCHHHHHHHHHHHHHH
FRKNDFAAAERWLNLVLESDLDRLITGIMTSWAKVGQGDADGGLTSLENLSGPPWYELFK
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCHHHHHH
AYHRALILANEGRTEEADAAFDQVISELAPRSVAPDTLGRLAEVYASYLSSRGEKERALA
HHHHEEEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
VLQQAEETGGGIATIPELRAKLETGGKLDSVVANASDGAAEILLNVATELASGGGDSYVR
HHHHHHHCCCCEEECHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHH
VYLQLARALRPHGDAVLVQLAHVAERQQDGEGAIAIYRMIEKDSPWTRFAEFQIGLNLAD
HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCHHH
LERNDEAVAHLKKVLEADPKDLRAYLALGGVYSSQKNYKAAAELYDDAVAEIPEPGREHW
CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHH
NIFYQRGIAYERLKEWPKAEPNFKKALELYPDHPQVLNYLGYSWIDMNMNLEEGMELIKK
HHHHHHCCHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHH
AVELRPSDGYIVDSLGWAYYKLGQYDEAVEHLERAVSLRPEDAVLNDHLGDVYWRVGRHL
HHHCCCCCCEEEECCCHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
EARYQWSQVKTLEPEPDLLAQIEEKLKNGLPPVDGEKVADAAGNARTVSDGAPSEPARQP
HHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCEECCCCCCCCCCCCC
EQPQAQPAAPAEPAQGATAETEATYRVKPGQSLWSIAVEELGNGERFREILDLNPVLRGD
CCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCC
PNRIRPGLELKLPTAGQ
CCCCCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7883699; 10984043 [H]