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The map label for this gene is ybfI [H]

Identifier: 110632935

GI number: 110632935

Start: 637185

End: 638126

Strand: Direct

Name: ybfI [H]

Synonym: Meso_0577

Alternate gene names: 110632935

Gene position: 637185-638126 (Clockwise)

Preceding gene: 110632934

Following gene: 110632937

Centisome position: 14.44

GC content: 60.72

Gene sequence:

>942_bases
ATGGAAACGCATTCGGCTCCGCTCTCTGCGGTGGTGGCCGAGCGCGAGGTTCAGCCCTCAGAAACTCATCCATCGGCAAG
GTCCACCGTAGAACCGACCTTCGCTGTGAGGCAGCTACAGGGTGGAGCCCCCGTCGAGCTCTGCTGGGGAACGAACACCG
CCAGGTCGTCCCTGCGGCATCTTCATGAGGATTATCGCTTCGGAATTGCCGGATCAGGCCACTGGGCGTGTCGATACCGA
GGTATCGATCACATCGTGACATCGGGGCACCTCCAGTATGCAGAGCCGGGCGAGACAAGCTTCTGCGCCTTCGACGGCGT
GAACGATTCAAGCTATCGGGTCATCGTCATCAGCCCGGCCGCGCTTCAGGCGATTTATGAGGATATCACGGGGCGTCCAT
CGAATGCGCCGCACTTCCGAGATCACATTATTGCGGACCCAGCGATCTGGCAGTCGTTCGCCTGCACGCACGCGGAACTC
ACAAGTCCGATGAGCAGGCTCGAGGCCTCATCGCTGCTTCGCGACTTGGTTGTCCAACTTCTTGCCCGGAATCTGAGCAG
CACTCGTGTGCCCCGTTGCACGCGCCACTCCAGCGGACTCGAGATCGTGCGCAGCTATCTGCATGATCAGATCGCGGCGA
ATCCATCGCTCGAGGAACTCGCCGCAATAGCGGGACTGAGTCCATTCCATTTCAGCAGGTTGTTCCGCCAGACGTTCGGT
CTACCGCCGCATGCCTACCAGAACCACCTGCGCATCGAGCGTGCGAAGGAGCTCTTGAAAGGCGGGAATTCAGCAGCCGC
AATCGCCCACGATCTCGGCTTCAGCGACCAACCCCATTTCATTCGCCATTTCCGCCGCCAAGTCGGCGTCACGCCGCAGC
GCTACCTGGACGCATGGCTGCACTGGAACCGCTCCTTCGAACCGCAGGCTCCTGCGTGTTAG

Upstream 100 bases:

>100_bases
GACGCCGAATCTCGCGCTCGACTTGATGCCACGATGCAACCCATCGTGCAGGAGTAGCCAAATGGATGAGGAATCCGGCC
GCACCGATTCCTCTTCACGG

Downstream 100 bases:

>100_bases
CTAAAGGGACTAGCGAACCTCAGCGCTCGTCCAGTTCGGGTTCAAGGCTGGCCACCACTTCGAAAAATCGTTCCGCAGTC
ACAGAAGGTAACGATCCTGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
METHSAPLSAVVAEREVQPSETHPSARSTVEPTFAVRQLQGGAPVELCWGTNTARSSLRHLHEDYRFGIAGSGHWACRYR
GIDHIVTSGHLQYAEPGETSFCAFDGVNDSSYRVIVISPAALQAIYEDITGRPSNAPHFRDHIIADPAIWQSFACTHAEL
TSPMSRLEASSLLRDLVVQLLARNLSSTRVPRCTRHSSGLEIVRSYLHDQIAANPSLEELAAIAGLSPFHFSRLFRQTFG
LPPHAYQNHLRIERAKELLKGGNSAAAIAHDLGFSDQPHFIRHFRRQVGVTPQRYLDAWLHWNRSFEPQAPAC

Sequences:

>Translated_313_residues
METHSAPLSAVVAEREVQPSETHPSARSTVEPTFAVRQLQGGAPVELCWGTNTARSSLRHLHEDYRFGIAGSGHWACRYR
GIDHIVTSGHLQYAEPGETSFCAFDGVNDSSYRVIVISPAALQAIYEDITGRPSNAPHFRDHIIADPAIWQSFACTHAEL
TSPMSRLEASSLLRDLVVQLLARNLSSTRVPRCTRHSSGLEIVRSYLHDQIAANPSLEELAAIAGLSPFHFSRLFRQTFG
LPPHAYQNHLRIERAKELLKGGNSAAAIAHDLGFSDQPHFIRHFRRQVGVTPQRYLDAWLHWNRSFEPQAPAC
>Mature_313_residues
METHSAPLSAVVAEREVQPSETHPSARSTVEPTFAVRQLQGGAPVELCWGTNTARSSLRHLHEDYRFGIAGSGHWACRYR
GIDHIVTSGHLQYAEPGETSFCAFDGVNDSSYRVIVISPAALQAIYEDITGRPSNAPHFRDHIIADPAIWQSFACTHAEL
TSPMSRLEASSLLRDLVVQLLARNLSSTRVPRCTRHSSGLEIVRSYLHDQIAANPSLEELAAIAGLSPFHFSRLFRQTFG
LPPHAYQNHLRIERAKELLKGGNSAAAIAHDLGFSDQPHFIRHFRRQVGVTPQRYLDAWLHWNRSFEPQAPAC

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790391, Length=125, Percent_Identity=32.8, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34838; Mature: 34838

Theoretical pI: Translated: 7.52; Mature: 7.52

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METHSAPLSAVVAEREVQPSETHPSARSTVEPTFAVRQLQGGAPVELCWGTNTARSSLRH
CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCHHHHHHHH
LHEDYRFGIAGSGHWACRYRGIDHIVTSGHLQYAEPGETSFCAFDGVNDSSYRVIVISPA
HHHHHCCCCCCCCCEEEEECCCHHHHHCCCEEECCCCCCCEEEECCCCCCCEEEEEECHH
ALQAIYEDITGRPSNAPHFRDHIIADPAIWQSFACTHAELTSPMSRLEASSLLRDLVVQL
HHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LARNLSSTRVPRCTRHSSGLEIVRSYLHDQIAANPSLEELAAIAGLSPFHFSRLFRQTFG
HHHHHHHCCCCCHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHC
LPPHAYQNHLRIERAKELLKGGNSAAAIAHDLGFSDQPHFIRHFRRQVGVTPQRYLDAWL
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHH
HWNRSFEPQAPAC
HCCCCCCCCCCCC
>Mature Secondary Structure
METHSAPLSAVVAEREVQPSETHPSARSTVEPTFAVRQLQGGAPVELCWGTNTARSSLRH
CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCHHHHHHHH
LHEDYRFGIAGSGHWACRYRGIDHIVTSGHLQYAEPGETSFCAFDGVNDSSYRVIVISPA
HHHHHCCCCCCCCCEEEEECCCHHHHHCCCEEECCCCCCCEEEECCCCCCCEEEEEECHH
ALQAIYEDITGRPSNAPHFRDHIIADPAIWQSFACTHAELTSPMSRLEASSLLRDLVVQL
HHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LARNLSSTRVPRCTRHSSGLEIVRSYLHDQIAANPSLEELAAIAGLSPFHFSRLFRQTFG
HHHHHHHCCCCCHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHC
LPPHAYQNHLRIERAKELLKGGNSAAAIAHDLGFSDQPHFIRHFRRQVGVTPQRYLDAWL
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHH
HWNRSFEPQAPAC
HCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]