| Definition | Mesorhizobium sp. BNC1, complete genome. |
|---|---|
| Accession | NC_008254 |
| Length | 4,412,446 |
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The map label for this gene is dppD [H]
Identifier: 110632761
GI number: 110632761
Start: 442638
End: 443606
Strand: Reverse
Name: dppD [H]
Synonym: Meso_0400
Alternate gene names: 110632761
Gene position: 443606-442638 (Counterclockwise)
Preceding gene: 110632762
Following gene: 110632760
Centisome position: 10.05
GC content: 61.09
Gene sequence:
>969_bases GTGGCGAATATAATTGAAATCAAATCGCTTTCCGTCGACTTCCGCAGTGTTGAGGGCACGATACACGCCGTTCGCGACGT GAGCCTTCACATCGGTGCCGGCGAACGGGTCGCCGTGGTCGGGGAATCCGGAAGCGGCAAATCCGTTACGGCACGGGCGA TCCTTGGCCTGCTGCCGCACCGCACCGCACGCTCCTCCGGAAGCATCCTGTTTGAGAATACCGAGATCCTGAACAGCCAC CGTTCGGATCGGCTTCGCGGCCGCGACATCACGATGATCTTTCAGGACCCCACCGCCGCGCTCAACCCGATGTTTCGGGT GCGGGAACAGTTCGCGGCTGTGCTGGCTCGCGGCGCCGCAGATCCCGCAAAGGGAGATCCGTCTGAGCGGATGAACGAAG CGCTCCGGCAAGTTTCCATCACGGACCCCGAGCGTGTCCTTGACAGCTATGCGTTTGAACTGAGCGGAGGACTTAACCAG CGCGTTATGATCGCCATGGCGCTGGCCAACCATCCGCGTCTGATCCTAGCCGACGAACCCGGCACCGCGCTCGATGTCAC TGTCCAGAACCAGACCCTCAAGATCATGCGGGACCTGACCGAGCGCCAGAATTCATCGGTGCTTCTGATCTCCCACAATC TCGGTGTGGTACGCAGCTTCGCCGACCGCATCTACATCATGTATGCCGGATCCATCGTTGAGGAAGGACGGACCGCGGAC GTCTTCCGCTCGCCCCAGCACCCTTACACTCAAGCGCTGATCAATGCAGTTCCGAGGCTCTCCGCCAGGATCGGGCCGAA AGGCATACCTGGAAGCGTGCCTTCCGCGAGAAGCGACATCAATGGCTGCGCTTTTGCGCCCCGCTGCAAATTTTCGCGCC CGAATTGCATGAACGGGACTATCGGTTTGCGTGGAGCGGGGCAACACCGCGCTGCATGCGTCTTGCTGGACGAGGTGGCG GCGCCATGA
Upstream 100 bases:
>100_bases TGGCTGTCCATCAGCGCGGGGTTCGCGATCTTCATTCTCGTGATCGGCTTCAATCTCGTTGGGGATGGGCTTCAAGACCT ATTCGACGCGGAGCAATGAC
Downstream 100 bases:
>100_bases CCATACCGTTGCTTGAAATTCGCGATCTCCAGAAGACCTTCCCCGTTGGTGGGCACAAGGTCCATGCCCTCGATTGCGTT AGCCTTTCCGTGCCGGAATT
Product: oligopeptide/dipeptide ABC transporter, ATPase subunit
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 322; Mature: 321
Protein sequence:
>322_residues MANIIEIKSLSVDFRSVEGTIHAVRDVSLHIGAGERVAVVGESGSGKSVTARAILGLLPHRTARSSGSILFENTEILNSH RSDRLRGRDITMIFQDPTAALNPMFRVREQFAAVLARGAADPAKGDPSERMNEALRQVSITDPERVLDSYAFELSGGLNQ RVMIAMALANHPRLILADEPGTALDVTVQNQTLKIMRDLTERQNSSVLLISHNLGVVRSFADRIYIMYAGSIVEEGRTAD VFRSPQHPYTQALINAVPRLSARIGPKGIPGSVPSARSDINGCAFAPRCKFSRPNCMNGTIGLRGAGQHRAACVLLDEVA AP
Sequences:
>Translated_322_residues MANIIEIKSLSVDFRSVEGTIHAVRDVSLHIGAGERVAVVGESGSGKSVTARAILGLLPHRTARSSGSILFENTEILNSH RSDRLRGRDITMIFQDPTAALNPMFRVREQFAAVLARGAADPAKGDPSERMNEALRQVSITDPERVLDSYAFELSGGLNQ RVMIAMALANHPRLILADEPGTALDVTVQNQTLKIMRDLTERQNSSVLLISHNLGVVRSFADRIYIMYAGSIVEEGRTAD VFRSPQHPYTQALINAVPRLSARIGPKGIPGSVPSARSDINGCAFAPRCKFSRPNCMNGTIGLRGAGQHRAACVLLDEVA AP >Mature_321_residues ANIIEIKSLSVDFRSVEGTIHAVRDVSLHIGAGERVAVVGESGSGKSVTARAILGLLPHRTARSSGSILFENTEILNSHR SDRLRGRDITMIFQDPTAALNPMFRVREQFAAVLARGAADPAKGDPSERMNEALRQVSITDPERVLDSYAFELSGGLNQR VMIAMALANHPRLILADEPGTALDVTVQNQTLKIMRDLTERQNSSVLLISHNLGVVRSFADRIYIMYAGSIVEEGRTADV FRSPQHPYTQALINAVPRLSARIGPKGIPGSVPSARSDINGCAFAPRCKFSRPNCMNGTIGLRGAGQHRAACVLLDEVAA P
Specific function: Part of the binding-protein-dependent transport system for dipeptides. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI11967969, Length=237, Percent_Identity=27.0042194092827, Blast_Score=71, Evalue=2e-12, Organism=Homo sapiens, GI27436953, Length=213, Percent_Identity=25.8215962441315, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI171184400, Length=245, Percent_Identity=29.3877551020408, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI48994883, Length=296, Percent_Identity=42.5675675675676, Blast_Score=229, Evalue=3e-61, Organism=Escherichia coli, GI1787759, Length=316, Percent_Identity=40.5063291139241, Blast_Score=224, Evalue=8e-60, Organism=Escherichia coli, GI1789963, Length=301, Percent_Identity=39.202657807309, Blast_Score=214, Evalue=4e-57, Organism=Escherichia coli, GI1787548, Length=320, Percent_Identity=34.6875, Blast_Score=202, Evalue=2e-53, Organism=Escherichia coli, GI145693107, Length=284, Percent_Identity=39.4366197183099, Blast_Score=199, Evalue=1e-52, Organism=Escherichia coli, GI1788506, Length=264, Percent_Identity=45.4545454545455, Blast_Score=199, Evalue=3e-52, Organism=Escherichia coli, GI1787500, Length=329, Percent_Identity=35.258358662614, Blast_Score=190, Evalue=1e-49, Organism=Escherichia coli, GI1789962, Length=309, Percent_Identity=33.6569579288026, Blast_Score=164, Evalue=1e-41, Organism=Escherichia coli, GI1787758, Length=281, Percent_Identity=33.0960854092527, Blast_Score=149, Evalue=2e-37, Organism=Escherichia coli, GI1789890, Length=235, Percent_Identity=37.4468085106383, Blast_Score=147, Evalue=8e-37, Organism=Escherichia coli, GI1787547, Length=260, Percent_Identity=32.3076923076923, Blast_Score=134, Evalue=1e-32, Organism=Escherichia coli, GI48994997, Length=241, Percent_Identity=35.2697095435685, Blast_Score=130, Evalue=1e-31, Organism=Escherichia coli, GI1786398, Length=287, Percent_Identity=31.0104529616725, Blast_Score=124, Evalue=1e-29, Organism=Escherichia coli, GI1789891, Length=211, Percent_Identity=36.0189573459716, Blast_Score=115, Evalue=4e-27, Organism=Escherichia coli, GI1787029, Length=256, Percent_Identity=31.25, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI1790162, Length=254, Percent_Identity=28.3464566929134, Blast_Score=102, Evalue=4e-23, Organism=Escherichia coli, GI1788761, Length=265, Percent_Identity=30.188679245283, Blast_Score=101, Evalue=6e-23, Organism=Escherichia coli, GI87081791, Length=254, Percent_Identity=31.8897637795276, Blast_Score=101, Evalue=7e-23, Organism=Escherichia coli, GI1788225, Length=256, Percent_Identity=32.8125, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1789032, Length=238, Percent_Identity=32.3529411764706, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1789672, Length=242, Percent_Identity=30.1652892561983, Blast_Score=99, Evalue=5e-22, Organism=Escherichia coli, GI87081709, Length=243, Percent_Identity=27.9835390946502, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1787370, Length=238, Percent_Identity=29.8319327731092, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1787089, Length=243, Percent_Identity=32.5102880658436, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI87081834, Length=216, Percent_Identity=32.4074074074074, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI87082267, Length=257, Percent_Identity=28.4046692607004, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1787712, Length=250, Percent_Identity=28.8, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1787792, Length=227, Percent_Identity=31.7180616740088, Blast_Score=84, Evalue=9e-18, Organism=Escherichia coli, GI1789991, Length=235, Percent_Identity=31.4893617021277, Blast_Score=84, Evalue=9e-18, Organism=Escherichia coli, GI1788644, Length=259, Percent_Identity=31.2741312741313, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1786563, Length=227, Percent_Identity=29.0748898678414, Blast_Score=81, Evalue=9e-17, Organism=Escherichia coli, GI1790467, Length=244, Percent_Identity=27.0491803278689, Blast_Score=81, Evalue=1e-16, Organism=Escherichia coli, GI1786872, Length=249, Percent_Identity=30.9236947791165, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1788450, Length=251, Percent_Identity=28.2868525896414, Blast_Score=79, Evalue=5e-16, Organism=Escherichia coli, GI1789873, Length=220, Percent_Identity=28.6363636363636, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1787105, Length=247, Percent_Identity=31.1740890688259, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1790739, Length=275, Percent_Identity=25.4545454545455, Blast_Score=75, Evalue=7e-15, Organism=Escherichia coli, GI1787112, Length=253, Percent_Identity=28.0632411067194, Blast_Score=75, Evalue=8e-15, Organism=Escherichia coli, GI1786345, Length=239, Percent_Identity=27.6150627615063, Blast_Score=75, Evalue=8e-15, Organism=Escherichia coli, GI87082268, Length=224, Percent_Identity=27.6785714285714, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1787164, Length=209, Percent_Identity=31.5789473684211, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1786703, Length=236, Percent_Identity=27.1186440677966, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI1786319, Length=234, Percent_Identity=25.2136752136752, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1787182, Length=233, Percent_Identity=26.6094420600858, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI1789593, Length=225, Percent_Identity=29.3333333333333, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1786253, Length=223, Percent_Identity=27.3542600896861, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1786803, Length=269, Percent_Identity=25.6505576208178, Blast_Score=66, Evalue=4e-12, Organism=Escherichia coli, GI1789864, Length=237, Percent_Identity=22.3628691983122, Blast_Score=65, Evalue=9e-12, Organism=Escherichia coli, GI1790190, Length=218, Percent_Identity=24.7706422018349, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1789586, Length=259, Percent_Identity=27.4131274131274, Blast_Score=64, Evalue=1e-11, Organism=Caenorhabditis elegans, GI193202349, Length=227, Percent_Identity=28.1938325991189, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI193211015, Length=228, Percent_Identity=28.9473684210526, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI71996809, Length=228, Percent_Identity=28.9473684210526, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI193211017, Length=228, Percent_Identity=28.9473684210526, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI71996550, Length=230, Percent_Identity=27.3913043478261, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI193209708, Length=223, Percent_Identity=28.2511210762332, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193208177, Length=227, Percent_Identity=29.5154185022026, Blast_Score=69, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17565938, Length=240, Percent_Identity=28.75, Blast_Score=69, Evalue=5e-12, Organism=Caenorhabditis elegans, GI115533608, Length=226, Percent_Identity=27.4336283185841, Blast_Score=67, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=254, Percent_Identity=25.5905511811024, Blast_Score=73, Evalue=6e-14, Organism=Saccharomyces cerevisiae, GI6322640, Length=236, Percent_Identity=25.8474576271186, Blast_Score=69, Evalue=7e-13, Organism=Drosophila melanogaster, GI28574533, Length=236, Percent_Identity=27.9661016949153, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI17136662, Length=221, Percent_Identity=28.9592760180996, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI23397593, Length=221, Percent_Identity=29.8642533936652, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24659289, Length=228, Percent_Identity=28.0701754385965, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI161076684, Length=236, Percent_Identity=27.5423728813559, Blast_Score=68, Evalue=9e-12, Organism=Drosophila melanogaster, GI24581617, Length=236, Percent_Identity=27.5423728813559, Blast_Score=68, Evalue=9e-12, Organism=Drosophila melanogaster, GI24581615, Length=236, Percent_Identity=27.5423728813559, Blast_Score=68, Evalue=9e-12, Organism=Drosophila melanogaster, GI161076682, Length=236, Percent_Identity=27.5423728813559, Blast_Score=68, Evalue=9e-12, Organism=Drosophila melanogaster, GI21357907, Length=229, Percent_Identity=31.4410480349345, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 34783; Mature: 34652
Theoretical pI: Translated: 9.29; Mature: 9.29
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANIIEIKSLSVDFRSVEGTIHAVRDVSLHIGAGERVAVVGESGSGKSVTARAILGLLPH CCCEEEEEEEEEEHHHHCCCEEEEEEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHCCC RTARSSGSILFENTEILNSHRSDRLRGRDITMIFQDPTAALNPMFRVREQFAAVLARGAA CCCCCCCCEEEECHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCC DPAKGDPSERMNEALRQVSITDPERVLDSYAFELSGGLNQRVMIAMALANHPRLILADEP CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEECCC GTALDVTVQNQTLKIMRDLTERQNSSVLLISHNLGVVRSFADRIYIMYAGSIVEEGRTAD CCEEEEEECCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCEEEEEEECCHHHCCCCHH VFRSPQHPYTQALINAVPRLSARIGPKGIPGSVPSARSDINGCAFAPRCKFSRPNCMNGT HHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC IGLRGAGQHRAACVLLDEVAAP EECCCCCCCCEEEEEEHHHCCC >Mature Secondary Structure ANIIEIKSLSVDFRSVEGTIHAVRDVSLHIGAGERVAVVGESGSGKSVTARAILGLLPH CCEEEEEEEEEEHHHHCCCEEEEEEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHCCC RTARSSGSILFENTEILNSHRSDRLRGRDITMIFQDPTAALNPMFRVREQFAAVLARGAA CCCCCCCCEEEECHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCC DPAKGDPSERMNEALRQVSITDPERVLDSYAFELSGGLNQRVMIAMALANHPRLILADEP CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEECCC GTALDVTVQNQTLKIMRDLTERQNSSVLLISHNLGVVRSFADRIYIMYAGSIVEEGRTAD CCEEEEEECCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCEEEEEEECCHHHCCCCHH VFRSPQHPYTQALINAVPRLSARIGPKGIPGSVPSARSDINGCAFAPRCKFSRPNCMNGT HHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC IGLRGAGQHRAACVLLDEVAAP EECCCCCCCCEEEEEEHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7542800; 8550458 [H]