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The map label for this gene is ddpC [H]

Identifier: 110632762

GI number: 110632762

Start: 443608

End: 444459

Strand: Reverse

Name: ddpC [H]

Synonym: Meso_0401

Alternate gene names: 110632762

Gene position: 444459-443608 (Counterclockwise)

Preceding gene: 110632763

Following gene: 110632761

Centisome position: 10.07

GC content: 60.09

Gene sequence:

>852_bases
ATGACGACTCGCCTCGCCATCCCCATTGCCCTGCGCCGGTATTCGCGCAATCCCGCCTCCCTTATCGGCGCTGCAACGGT
TCTCGTCGTTGTCGTGGCCGCAGTCCTGGCGCCTTACATCACCCCTTTTCCCGAGCACGCCGGTACGTTTGTCGACTTCG
CAAATATGGGACAGCCTCCAAGCAGCGTGCACCTCCTAGGCACCGACCTGATAGGGCGAGATATTTTTTCGCGCATTCTC
TTCGGCTTTAGGAGTTCGCTTCTGCTCGCCGTCATCGTCCTGTCCATCGCGGTGAGCTTCGGCACGTTCGTGGGGCTTCT
TGCGGGATATGGAAGCCCGGCGACGCGAACCGTGCTGATGTATGTCATCGACATTTTCCTTTCGCTCCCTTCGCTGTTGC
TGGCGATGGCGATCATCGGCCTATTCCGCCCCTCGCAGATCGTCGCGATGATGGCTGTCTCCGTCGTCTGGTGGCCGTGG
TACGCGCGCTTGGTGGGAAATCTCGTCTGGTCGATCCGTCGCGAAGGCTTCGTTCTTTCGGCAGAGCTCGTCGGTGCATC
AAAGGCGCGGATCGCATTGCTGGAAATCCTGCCCAACTGCATTCCCTCCCTGCTGACCAAGGCCAGCATAGACATGGGCC
TTGTCGTGCTGCTCGGTGCAAGCCTGAGTTTCGTGGGGCTTGGCGCCCCTCCGCCCCAGCCGGATCTGGGCACGATGGTT
GCCGAAGGCGCGAGCTATCTACCCGAATACTGGTGGCTGTCCATCAGCGCGGGGTTCGCGATCTTCATTCTCGTGATCGG
CTTCAATCTCGTTGGGGATGGGCTTCAAGACCTATTCGACGCGGAGCAATGA

Upstream 100 bases:

>100_bases
CCGTCGTGCTGGTGATTTGCCTGGCTTTCATCCTCATCAACGCGCTGGTCGATGCCGTGATCATCTACGTGAACCCGAAA
CTGCGGGCGCGGAGATCCAA

Downstream 100 bases:

>100_bases
CGTGGCGAATATAATTGAAATCAAATCGCTTTCCGTCGACTTCCGCAGTGTTGAGGGCACGATACACGCCGTTCGCGACG
TGAGCCTTCACATCGGTGCC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MTTRLAIPIALRRYSRNPASLIGAATVLVVVVAAVLAPYITPFPEHAGTFVDFANMGQPPSSVHLLGTDLIGRDIFSRIL
FGFRSSLLLAVIVLSIAVSFGTFVGLLAGYGSPATRTVLMYVIDIFLSLPSLLLAMAIIGLFRPSQIVAMMAVSVVWWPW
YARLVGNLVWSIRREGFVLSAELVGASKARIALLEILPNCIPSLLTKASIDMGLVVLLGASLSFVGLGAPPPQPDLGTMV
AEGASYLPEYWWLSISAGFAIFILVIGFNLVGDGLQDLFDAEQ

Sequences:

>Translated_283_residues
MTTRLAIPIALRRYSRNPASLIGAATVLVVVVAAVLAPYITPFPEHAGTFVDFANMGQPPSSVHLLGTDLIGRDIFSRIL
FGFRSSLLLAVIVLSIAVSFGTFVGLLAGYGSPATRTVLMYVIDIFLSLPSLLLAMAIIGLFRPSQIVAMMAVSVVWWPW
YARLVGNLVWSIRREGFVLSAELVGASKARIALLEILPNCIPSLLTKASIDMGLVVLLGASLSFVGLGAPPPQPDLGTMV
AEGASYLPEYWWLSISAGFAIFILVIGFNLVGDGLQDLFDAEQ
>Mature_282_residues
TTRLAIPIALRRYSRNPASLIGAATVLVVVVAAVLAPYITPFPEHAGTFVDFANMGQPPSSVHLLGTDLIGRDIFSRILF
GFRSSLLLAVIVLSIAVSFGTFVGLLAGYGSPATRTVLMYVIDIFLSLPSLLLAMAIIGLFRPSQIVAMMAVSVVWWPWY
ARLVGNLVWSIRREGFVLSAELVGASKARIALLEILPNCIPSLLTKASIDMGLVVLLGASLSFVGLGAPPPQPDLGTMVA
EGASYLPEYWWLSISAGFAIFILVIGFNLVGDGLQDLFDAEQ

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=266, Percent_Identity=35.7142857142857, Blast_Score=179, Evalue=2e-46,
Organism=Escherichia coli, GI1787054, Length=271, Percent_Identity=34.3173431734317, Blast_Score=161, Evalue=4e-41,
Organism=Escherichia coli, GI1789964, Length=275, Percent_Identity=36.3636363636364, Blast_Score=134, Evalue=5e-33,
Organism=Escherichia coli, GI1789889, Length=230, Percent_Identity=36.5217391304348, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1787498, Length=277, Percent_Identity=30.6859205776173, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1787549, Length=276, Percent_Identity=28.9855072463768, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1788505, Length=243, Percent_Identity=26.7489711934156, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30264; Mature: 30133

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTRLAIPIALRRYSRNPASLIGAATVLVVVVAAVLAPYITPFPEHAGTFVDFANMGQPP
CCCEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCC
SSVHLLGTDLIGRDIFSRILFGFRSSLLLAVIVLSIAVSFGTFVGLLAGYGSPATRTVLM
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
YVIDIFLSLPSLLLAMAIIGLFRPSQIVAMMAVSVVWWPWYARLVGNLVWSIRREGFVLS
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE
AELVGASKARIALLEILPNCIPSLLTKASIDMGLVVLLGASLSFVGLGAPPPQPDLGTMV
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCCCCHHHHH
AEGASYLPEYWWLSISAGFAIFILVIGFNLVGDGLQDLFDAEQ
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TTRLAIPIALRRYSRNPASLIGAATVLVVVVAAVLAPYITPFPEHAGTFVDFANMGQPP
CCEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCC
SSVHLLGTDLIGRDIFSRILFGFRSSLLLAVIVLSIAVSFGTFVGLLAGYGSPATRTVLM
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
YVIDIFLSLPSLLLAMAIIGLFRPSQIVAMMAVSVVWWPWYARLVGNLVWSIRREGFVLS
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE
AELVGASKARIALLEILPNCIPSLLTKASIDMGLVVLLGASLSFVGLGAPPPQPDLGTMV
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCCCCHHHHH
AEGASYLPEYWWLSISAGFAIFILVIGFNLVGDGLQDLFDAEQ
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]