Click here to switch to the map view.

The map label for this gene is yiaN [C]

Identifier: 110632705

GI number: 110632705

Start: 384219

End: 385640

Strand: Reverse

Name: yiaN [C]

Synonym: Meso_0344

Alternate gene names: 110632705

Gene position: 385640-384219 (Counterclockwise)

Preceding gene: 110632706

Following gene: 110632704

Centisome position: 8.74

GC content: 61.95

Gene sequence:

>1422_bases
ATGACCGACCCGCAGATCGCTATCATGATGCTCGGGATCTTCATCCTCTGCATCTTCCTCGGCTTCCCCATCGCCTTCAC
GCTGATGGCCCTAGGTGTGGGCTTCGGCTACTATGCCTATTTCGACGCGAGCCGGATGTGGCGCTCCTATAACCGTGCGG
TGGAGGACGGCGCCGATAGCTGGACGCTGATCCAGACCTGGATCGATGGCTTCTTCAACAACCGCATCTTCGACCTGTTC
GTGAACCAGACCTACTCGGTCATGGCGAACGAGGTGCTGACCGCCGTCCCGCTTTTCCTGTTCATGGGCTACGTCGTCGA
GCGCGCCAACATCGTCGACAAGCTCTTTTCCACGCTCTACATCGCCGCGCGGCGCGTGCCCGGGGCCATGGCCGTAGCCG
CGCTGATTACCTGCACGCTTTTCGCCACCGCCACCGGTATCGTCGGCGCGGTGGTGACCCTGATGGGACTGCTCGCCTTT
CCAGCGATGCTGAAGGCGCGCTACGACACGAGCTTCGCCTCCGGCGTGATCTGCGCCGGCGGCACGCTCGGCATCCTCAT
TCCGCCGTCGATCATGCTGATTGTCTACGCCGCGGCTTCCGGCGTCTCGATCGTGCGGCTCTATGCGGGCGCTCTTCTGC
CCGGCCTGCTGCTCGCCGGGCTCTACTTGGTCTACGTGATCGGGCGCGCGATTCTTCAGCCCTCCGTAGCGCCCAAACCA
AGCAAGGAAGATGTGGGCGATACGCCGATCGGCACGCTGCTGTTCATGATCGTCACTTCGTTCCTGCCGTTGGCCTTCCT
CATCCTCGCCGTGCTCGGCTCTATCCTCTTCGGGCTGGCGACGCCGACGGAAGCTGCTTCCGCGGGCGCGCTCGGCGGTC
TCATCCTGGCGGTCGCCTATCGCGCCCTCACTTGGCAGCGGCTGCGCGAATCCGTCTATCTCACCATGAAGACCACGGCC
ATGGTCTGCTGGCTCTTCGTCGGCTCCTGGGTGTTCTCCTCGGTTTTCTCATATCTCGGCGGAGAAGGCCTGATCCGGGA
CTTCGTCACCGGCCTCGATATGTCGCCGATCATGTTCCTGATCCTGGCGCAGATCATCATCTTCCTCCTTGGCTGGCCGC
TGGAATGGTCGGAGATCATCATCATCTTCGTGCCGATCTTCCTGCCGCTGCTTGCGCATTTCGACGTCGACCCGCTGTTC
TTCGGCATCCTCGTGGCGCTGAACCTGCAGACATCATTCCTCACCCCGCCCATGGCGATGTCCGCCTATTACCTCAAGGG
CATCGCCCCACCGCAGGTGAGGCTGACGCAGATTTTCGCGGGGTGCATGCCGTTCCTGGTGATGGTCATTCTTTCCATGA
TCATCGTCTACATCTTCCCCGGCACCGTCTACACCCTGCCGGAGCTGGTCTATGGCCGCTAA

Upstream 100 bases:

>100_bases
AGGAGGACGCAGTGGAATTGGAAGATCAGCTCATAAGGCAGGTGGCGGCGGGCCACGGCGAAGATGCCGCTATGATCGCC
GCGGGAAGGAAGCCAGAAAA

Downstream 100 bases:

>100_bases
GCGCATCTCCACTGCGGAACCCACCGCGCTCGGAGCGCGCGAGGCGGCCTGGCGCATCGCCGAGGGAGCGCTGTCCTCGG
CGGAGCTGGTAACGGCATGC

Product: TRAP C4-dicarboxylate transport system permease DctM subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 473; Mature: 472

Protein sequence:

>473_residues
MTDPQIAIMMLGIFILCIFLGFPIAFTLMALGVGFGYYAYFDASRMWRSYNRAVEDGADSWTLIQTWIDGFFNNRIFDLF
VNQTYSVMANEVLTAVPLFLFMGYVVERANIVDKLFSTLYIAARRVPGAMAVAALITCTLFATATGIVGAVVTLMGLLAF
PAMLKARYDTSFASGVICAGGTLGILIPPSIMLIVYAAASGVSIVRLYAGALLPGLLLAGLYLVYVIGRAILQPSVAPKP
SKEDVGDTPIGTLLFMIVTSFLPLAFLILAVLGSILFGLATPTEAASAGALGGLILAVAYRALTWQRLRESVYLTMKTTA
MVCWLFVGSWVFSSVFSYLGGEGLIRDFVTGLDMSPIMFLILAQIIIFLLGWPLEWSEIIIIFVPIFLPLLAHFDVDPLF
FGILVALNLQTSFLTPPMAMSAYYLKGIAPPQVRLTQIFAGCMPFLVMVILSMIIVYIFPGTVYTLPELVYGR

Sequences:

>Translated_473_residues
MTDPQIAIMMLGIFILCIFLGFPIAFTLMALGVGFGYYAYFDASRMWRSYNRAVEDGADSWTLIQTWIDGFFNNRIFDLF
VNQTYSVMANEVLTAVPLFLFMGYVVERANIVDKLFSTLYIAARRVPGAMAVAALITCTLFATATGIVGAVVTLMGLLAF
PAMLKARYDTSFASGVICAGGTLGILIPPSIMLIVYAAASGVSIVRLYAGALLPGLLLAGLYLVYVIGRAILQPSVAPKP
SKEDVGDTPIGTLLFMIVTSFLPLAFLILAVLGSILFGLATPTEAASAGALGGLILAVAYRALTWQRLRESVYLTMKTTA
MVCWLFVGSWVFSSVFSYLGGEGLIRDFVTGLDMSPIMFLILAQIIIFLLGWPLEWSEIIIIFVPIFLPLLAHFDVDPLF
FGILVALNLQTSFLTPPMAMSAYYLKGIAPPQVRLTQIFAGCMPFLVMVILSMIIVYIFPGTVYTLPELVYGR
>Mature_472_residues
TDPQIAIMMLGIFILCIFLGFPIAFTLMALGVGFGYYAYFDASRMWRSYNRAVEDGADSWTLIQTWIDGFFNNRIFDLFV
NQTYSVMANEVLTAVPLFLFMGYVVERANIVDKLFSTLYIAARRVPGAMAVAALITCTLFATATGIVGAVVTLMGLLAFP
AMLKARYDTSFASGVICAGGTLGILIPPSIMLIVYAAASGVSIVRLYAGALLPGLLLAGLYLVYVIGRAILQPSVAPKPS
KEDVGDTPIGTLLFMIVTSFLPLAFLILAVLGSILFGLATPTEAASAGALGGLILAVAYRALTWQRLRESVYLTMKTTAM
VCWLFVGSWVFSSVFSYLGGEGLIRDFVTGLDMSPIMFLILAQIIIFLLGWPLEWSEIIIIFVPIFLPLLAHFDVDPLFF
GILVALNLQTSFLTPPMAMSAYYLKGIAPPQVRLTQIFAGCMPFLVMVILSMIIVYIFPGTVYTLPELVYGR

Specific function: Unknown

COG id: COG4664

COG function: function code Q; TRAP-type mannitol/chloroaromatic compound transport system, large permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TRAP transporter large permease family [H]

Homologues:

Organism=Escherichia coli, GI48994950, Length=441, Percent_Identity=23.5827664399093, Blast_Score=93, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010656
- InterPro:   IPR004681 [H]

Pfam domain/function: PF06808 DctM [H]

EC number: NA

Molecular weight: Translated: 51506; Mature: 51374

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: PS00079 MULTICOPPER_OXIDASE1 ; PS00287 CYSTATIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDPQIAIMMLGIFILCIFLGFPIAFTLMALGVGFGYYAYFDASRMWRSYNRAVEDGADS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
WTLIQTWIDGFFNNRIFDLFVNQTYSVMANEVLTAVPLFLFMGYVVERANIVDKLFSTLY
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAARRVPGAMAVAALITCTLFATATGIVGAVVTLMGLLAFPAMLKARYDTSFASGVICAG
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCEEECC
GTLGILIPPSIMLIVYAAASGVSIVRLYAGALLPGLLLAGLYLVYVIGRAILQPSVAPKP
CCEEEECCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
SKEDVGDTPIGTLLFMIVTSFLPLAFLILAVLGSILFGLATPTEAASAGALGGLILAVAY
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
RALTWQRLRESVYLTMKTTAMVCWLFVGSWVFSSVFSYLGGEGLIRDFVTGLDMSPIMFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHH
ILAQIIIFLLGWPLEWSEIIIIFVPIFLPLLAHFDVDPLFFGILVALNLQTSFLTPPMAM
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHCCCCHHH
SAYYLKGIAPPQVRLTQIFAGCMPFLVMVILSMIIVYIFPGTVYTLPELVYGR
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
>Mature Secondary Structure 
TDPQIAIMMLGIFILCIFLGFPIAFTLMALGVGFGYYAYFDASRMWRSYNRAVEDGADS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
WTLIQTWIDGFFNNRIFDLFVNQTYSVMANEVLTAVPLFLFMGYVVERANIVDKLFSTLY
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAARRVPGAMAVAALITCTLFATATGIVGAVVTLMGLLAFPAMLKARYDTSFASGVICAG
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCEEECC
GTLGILIPPSIMLIVYAAASGVSIVRLYAGALLPGLLLAGLYLVYVIGRAILQPSVAPKP
CCEEEECCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
SKEDVGDTPIGTLLFMIVTSFLPLAFLILAVLGSILFGLATPTEAASAGALGGLILAVAY
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
RALTWQRLRESVYLTMKTTAMVCWLFVGSWVFSSVFSYLGGEGLIRDFVTGLDMSPIMFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHH
ILAQIIIFLLGWPLEWSEIIIIFVPIFLPLLAHFDVDPLFFGILVALNLQTSFLTPPMAM
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHCCCCHHH
SAYYLKGIAPPQVRLTQIFAGCMPFLVMVILSMIIVYIFPGTVYTLPELVYGR
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]