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The map label for this gene is fliN [H]

Identifier: 110632666

GI number: 110632666

Start: 339561

End: 339926

Strand: Direct

Name: fliN [H]

Synonym: Meso_0305

Alternate gene names: 110632666

Gene position: 339561-339926 (Clockwise)

Preceding gene: 110632665

Following gene: 110632667

Centisome position: 7.7

GC content: 58.74

Gene sequence:

>366_bases
ATGAGCAAGACACCATCCGCCGTCCACAAAAGCGAAGGCGGGACGCTTGATAAAGCGATAGAGGAGATGCGCAGCGCGCT
CCATGAAGAGGCACAGCCGAACATGGATGCGGAAAAGACCGGCTTCCTCGTTGACATTCCCGTTGAGCTGCAGATCGTTC
TGGGCAGTGCGGAAATGACGGTATCTGAGTTGATGGCGCTGCAGCGTGGCTCCACCGTCTCTCTCGATAGGCGCATCGGC
GAACCGGTCGAAATCATGGTCAATGGCAGGCTGATCGCGCGCGGCGAGATAACGATCCTGGAGAACGATCCGAGCCGCTT
CGGCGTGCGTCTGACGGAGATCGGCGGCTCGATCAAGGCTGAATGA

Upstream 100 bases:

>100_bases
TCGGCCGTTTGGGCCAGAACTACACCGTTCGTATCAGGCAGCCTTTCGATGACCGGCAGGCCGTCCTCGACGGCTTGCTG
GGCGACTGAAGGAGAACGAG

Downstream 100 bases:

>100_bases
AAGCGCGCTTCGGAGACGAATGGTGACCACACCCGTCAGGCTGACCCAGGCAGAAAAGGCGGCCGCCATCCTCGTGGCGA
TGGGCAAGCCCTCCGCGGGC

Product: flagellar motor switch protein FliN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 121; Mature: 120

Protein sequence:

>121_residues
MSKTPSAVHKSEGGTLDKAIEEMRSALHEEAQPNMDAEKTGFLVDIPVELQIVLGSAEMTVSELMALQRGSTVSLDRRIG
EPVEIMVNGRLIARGEITILENDPSRFGVRLTEIGGSIKAE

Sequences:

>Translated_121_residues
MSKTPSAVHKSEGGTLDKAIEEMRSALHEEAQPNMDAEKTGFLVDIPVELQIVLGSAEMTVSELMALQRGSTVSLDRRIG
EPVEIMVNGRLIARGEITILENDPSRFGVRLTEIGGSIKAE
>Mature_120_residues
SKTPSAVHKSEGGTLDKAIEEMRSALHEEAQPNMDAEKTGFLVDIPVELQIVLGSAEMTVSELMALQRGSTVSLDRRIGE
PVEIMVNGRLIARGEITILENDPSRFGVRLTEIGGSIKAE

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Bacterial flagellum basal body (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=73, Percent_Identity=45.2054794520548, Blast_Score=72, Evalue=1e-14,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 13103; Mature: 12972

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKTPSAVHKSEGGTLDKAIEEMRSALHEEAQPNMDAEKTGFLVDIPVELQIVLGSAEMT
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCEEEEEEECCCHHH
VSELMALQRGSTVSLDRRIGEPVEIMVNGRLIARGEITILENDPSRFGVRLTEIGGSIKA
HHHHHHHHCCCEEEEHHHCCCCEEEEECCEEEECCEEEEEECCCHHHCEEEEECCCCCCC
E
C
>Mature Secondary Structure 
SKTPSAVHKSEGGTLDKAIEEMRSALHEEAQPNMDAEKTGFLVDIPVELQIVLGSAEMT
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCEEEEEEECCCHHH
VSELMALQRGSTVSLDRRIGEPVEIMVNGRLIARGEITILENDPSRFGVRLTEIGGSIKA
HHHHHHHHCCCEEEEHHHCCCCEEEEECCEEEECCEEEEEECCCHHHCEEEEECCCCCCC
E
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9858749; 11481430 [H]