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The map label for this gene is fliM [H]

Identifier: 110632665

GI number: 110632665

Start: 338614

End: 339549

Strand: Direct

Name: fliM [H]

Synonym: Meso_0304

Alternate gene names: 110632665

Gene position: 338614-339549 (Clockwise)

Preceding gene: 110632664

Following gene: 110632666

Centisome position: 7.67

GC content: 63.78

Gene sequence:

>936_bases
ATGAAGGCACCCAAAAGCGACCCGATACCGATGCGCGACCTCGTCGTTGAACGGCTGGTAGGCGCGACGGGGGATCTACG
CCAGGTCACTGAGGCCGCGCGAACCACGGCCATGAGGTCCTTGCCGGTGCTGCAGGACATCTTCCAGGCGAAGTTTTCCG
CACCTCTTGTCCTCGATATTGCTGGTGTCGAGGTTGTGAGGCTCGCGGAGCTGAAACCGGAGCCGGACTCCTTCGACGCA
CTCGTTGTCATCCCTGCGACTGACTCCCGCGACGCGCTCACCATGCGGCTTGACGCGCAGGCGCTGTCCCTTCTCGTGAG
CATTCTCCTCGGCGGTGATCCGGATATTCCGCCTTCGCCCCTCGACCGGCCGCCCTCCAGGATCGAGCTGGATGTAGCCA
GGCTCGTTTTCGGCGCTTTCGCACAGGCCTTGAACGGTACGGGAAGCCGCTCCCTCGGTTTGCGCCTGCCTGCCCCGCAG
CCTCTTGCAGGGCCGGGCGATTTCAAACGATTCCTCGTCCGCGACGGGCCGGGCATACGCATCGCGTTTTCGCTGGGAGC
AGGTCCGGTATCGGGCATCCTGACCGCCTGGCTACCCCATCGGATTATCCTCAAGGCGCGGGCTCCCGCCGCCGAAGATG
ATTCGCCAGCGCACACGCAGTGGAAGCAGCGCTTCGGCGAGGAGGTTCGTCGCTCGACGGTACAGGTGACCGCCACGATT
CCTCTTACGAAGCTCCCGCTTGGAGCACTTGCCAATCTCAAGCCAGGCCAGGTGCTCGAGCTGCAGGAGAACGCGCCGAG
GGAAACGCGCCTTTCCGTGCGCAATCGTCCCGTCTTCGTTTGCGAATTCGGCCGTTTGGGCCAGAACTACACCGTTCGTA
TCAGGCAGCCTTTCGATGACCGGCAGGCCGTCCTCGACGGCTTGCTGGGCGACTGA

Upstream 100 bases:

>100_bases
TCGGCCTATGACAGACCTTCCATCGATGCGGTCGAGCAGAAAACGCTGGGCCAAGCTCCAGCCGGTGCTGCACCAGAAAA
GAAGGCGGCTTGAGCGGCGG

Downstream 100 bases:

>100_bases
AGGAGAACGAGATGAGCAAGACACCATCCGCCGTCCACAAAAGCGAAGGCGGGACGCTTGATAAAGCGATAGAGGAGATG
CGCAGCGCGCTCCATGAAGA

Product: surface presentation of antigens (SPOA) protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MKAPKSDPIPMRDLVVERLVGATGDLRQVTEAARTTAMRSLPVLQDIFQAKFSAPLVLDIAGVEVVRLAELKPEPDSFDA
LVVIPATDSRDALTMRLDAQALSLLVSILLGGDPDIPPSPLDRPPSRIELDVARLVFGAFAQALNGTGSRSLGLRLPAPQ
PLAGPGDFKRFLVRDGPGIRIAFSLGAGPVSGILTAWLPHRIILKARAPAAEDDSPAHTQWKQRFGEEVRRSTVQVTATI
PLTKLPLGALANLKPGQVLELQENAPRETRLSVRNRPVFVCEFGRLGQNYTVRIRQPFDDRQAVLDGLLGD

Sequences:

>Translated_311_residues
MKAPKSDPIPMRDLVVERLVGATGDLRQVTEAARTTAMRSLPVLQDIFQAKFSAPLVLDIAGVEVVRLAELKPEPDSFDA
LVVIPATDSRDALTMRLDAQALSLLVSILLGGDPDIPPSPLDRPPSRIELDVARLVFGAFAQALNGTGSRSLGLRLPAPQ
PLAGPGDFKRFLVRDGPGIRIAFSLGAGPVSGILTAWLPHRIILKARAPAAEDDSPAHTQWKQRFGEEVRRSTVQVTATI
PLTKLPLGALANLKPGQVLELQENAPRETRLSVRNRPVFVCEFGRLGQNYTVRIRQPFDDRQAVLDGLLGD
>Mature_311_residues
MKAPKSDPIPMRDLVVERLVGATGDLRQVTEAARTTAMRSLPVLQDIFQAKFSAPLVLDIAGVEVVRLAELKPEPDSFDA
LVVIPATDSRDALTMRLDAQALSLLVSILLGGDPDIPPSPLDRPPSRIELDVARLVFGAFAQALNGTGSRSLGLRLPAPQ
PLAGPGDFKRFLVRDGPGIRIAFSLGAGPVSGILTAWLPHRIILKARAPAAEDDSPAHTQWKQRFGEEVRRSTVQVTATI
PLTKLPLGALANLKPGQVLELQENAPRETRLSVRNRPVFVCEFGRLGQNYTVRIRQPFDDRQAVLDGLLGD

Specific function: FliM is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1868

COG function: function code N; Flagellar motor switch protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein. Bacterial flagellum basal body (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliM family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 33679; Mature: 33679

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAPKSDPIPMRDLVVERLVGATGDLRQVTEAARTTAMRSLPVLQDIFQAKFSAPLVLDI
CCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
AGVEVVRLAELKPEPDSFDALVVIPATDSRDALTMRLDAQALSLLVSILLGGDPDIPPSP
CCCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEECHHHHHHHHHHHHCCCCCCCCCC
LDRPPSRIELDVARLVFGAFAQALNGTGSRSLGLRLPAPQPLAGPGDFKRFLVRDGPGIR
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCHHHHHHEECCCCEE
IAFSLGAGPVSGILTAWLPHRIILKARAPAAEDDSPAHTQWKQRFGEEVRRSTVQVTATI
EEEEECCCCHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCEEEEEEEC
PLTKLPLGALANLKPGQVLELQENAPRETRLSVRNRPVFVCEFGRLGQNYTVRIRQPFDD
CHHHCCHHHHCCCCCCCEEEECCCCCHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCCH
RQAVLDGLLGD
HHHHHHHHCCC
>Mature Secondary Structure
MKAPKSDPIPMRDLVVERLVGATGDLRQVTEAARTTAMRSLPVLQDIFQAKFSAPLVLDI
CCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
AGVEVVRLAELKPEPDSFDALVVIPATDSRDALTMRLDAQALSLLVSILLGGDPDIPPSP
CCCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEECHHHHHHHHHHHHCCCCCCCCCC
LDRPPSRIELDVARLVFGAFAQALNGTGSRSLGLRLPAPQPLAGPGDFKRFLVRDGPGIR
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCHHHHHHEECCCCEE
IAFSLGAGPVSGILTAWLPHRIILKARAPAAEDDSPAHTQWKQRFGEEVRRSTVQVTATI
EEEEECCCCHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCEEEEEEEC
PLTKLPLGALANLKPGQVLELQENAPRETRLSVRNRPVFVCEFGRLGQNYTVRIRQPFDD
CHHHCCHHHHCCCCCCCEEEECCCCCHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCCH
RQAVLDGLLGD
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9858749; 11481430 [H]