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The map label for this gene is rpoZ

Identifier: 109947215

GI number: 109947215

Start: 559034

End: 559258

Strand: Direct

Name: rpoZ

Synonym: Hac_0637

Alternate gene names: 109947215

Gene position: 559034-559258 (Clockwise)

Preceding gene: 109947214

Following gene: 109947216

Centisome position: 35.98

GC content: 36.89

Gene sequence:

>225_bases
TTGAAAAAAGAAAGAACAGAGAGTTTAGTCGCTCAAGCCTTAAAAAATATTGGGAACGACCGCTACATGCTAGATAATTT
GGTTTTCGCTCGGGTGAAGCAATTAAACGCTGGAGCCAAAACTTTAGTGAATATGGATCCTAAACGCCATAAATTAGTGG
ATATTGCTATCAGAGAAATCGCTGAAGGGAAAATTGATATAGATAGGATAGATGAACGAAATTGA

Upstream 100 bases:

>100_bases
AAAAGGGAATTTATTGCAAGTGATTAAGCACCAACAAGGCGTATTTTCTATGGTAAAATAAGCCCTTTAAAATTTGATAG
TTTAAAATAAAAGGATAAGT

Downstream 100 bases:

>100_bases
TAAATCCGTTGATATCGGATTCCTACGGATTCTTGATGTTATTAAAAAAGTTAAAAACCCAAAGAGTGGCATTGAAGTTT
TAAGGACTTTAATTGGTTTC

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 74; Mature: 74

Protein sequence:

>74_residues
MKKERTESLVAQALKNIGNDRYMLDNLVFARVKQLNAGAKTLVNMDPKRHKLVDIAIREIAEGKIDIDRIDERN

Sequences:

>Translated_74_residues
MKKERTESLVAQALKNIGNDRYMLDNLVFARVKQLNAGAKTLVNMDPKRHKLVDIAIREIAEGKIDIDRIDERN
>Mature_74_residues
MKKERTESLVAQALKNIGNDRYMLDNLVFARVKQLNAGAKTLVNMDPKRHKLVDIAIREIAEGKIDIDRIDERN

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_HELAH (Q17Y32)

Other databases:

- EMBL:   AM260522
- RefSeq:   YP_664443.1
- STRING:   Q17Y32
- GeneID:   4176866
- GenomeReviews:   AM260522_GR
- KEGG:   hac:Hac_0637
- eggNOG:   COG1758
- HOGENOM:   HBG321313
- OMA:   MRTEQIT
- ProtClustDB:   PRK00392
- BioCyc:   HACI382638:HAC_0637-MONOMER
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 8505; Mature: 8505

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKERTESLVAQALKNIGNDRYMLDNLVFARVKQLNAGAKTLVNMDPKRHKLVDIAIREI
CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHH
AEGKIDIDRIDERN
HCCCCCCCCCCCCC
>Mature Secondary Structure
MKKERTESLVAQALKNIGNDRYMLDNLVFARVKQLNAGAKTLVNMDPKRHKLVDIAIREI
CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHH
AEGKIDIDRIDERN
HCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA