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The map label for this gene is yggB [C]

Identifier: 109947204

GI number: 109947204

Start: 548265

End: 549089

Strand: Direct

Name: yggB [C]

Synonym: Hac_0625

Alternate gene names: 109947204

Gene position: 548265-549089 (Clockwise)

Preceding gene: 109947203

Following gene: 109947205

Centisome position: 35.28

GC content: 39.27

Gene sequence:

>825_bases
ATGGATGAAATTAAAACGCTCTTAATAGATTTTTTGCCGTTAGCCAAGTATTTTGGGATAGTCTTAATCAAAGCCGTTAT
TATCGCTTGCGTGGGTTTTTATCTTTCGTTTTTCTTGCGCAAAAAAATCGTGAAACTTTTATCCAAAAAAGACGAAATTC
TAGCGAATTTTATCGCACAAGTCGCCTTTGTTTTAATCCTTATCATCACTACAATCATTACGCTCAGTACTTTAGGCGTG
CAAACCACCTCCATTATCACCGTTTTAGGAACGGCAGGGATTGCGGTGGCGTTGGCCTTAAAAGACTCTCTCTCAAGCAT
TGCTGGAGGGATTATCCTTATTGTGTTGCGCCCTTTTAAAAAGGGGGATACGGTTGAGCTTTCTGGACTTAATGGTAAGG
TGGAGTCTGTCAATCTTTTCAACACTTCTTTGCGTCTTCATGACGGGCGCTTGGCGGTTTTGCCTAACAGAAATGTCGCT
AATTCCAATATCATCAATAGCAATAATACCGAATGTCGGCGCATTGAATGGGTGTGTGGGGTAGGGTATGGGAGCGATAT
TGAATTGGTGCATAAGACTATAAAAGATGTCATTGACGCAATGGAAAAAATTGATAAAAACATGCCCACTTTTATTGGAA
TTACGGATTTTGGACAAAGTTCATTGAATTTCACTATTAGGGTTTGGGCAAAGATTGAAGATGGGATCTTTAATGTGCGA
AGCGAATTGATTGAGCGCATCAAAAACGCCCTAGACGCTAACCAGATTGAAATCCCTTTCAATAAGTTAGATATTTCTAT
TAAAAATCAAGACTCTTCTAAGTGA

Upstream 100 bases:

>100_bases
GATACTAGCACAGGGTTTGGTGTTTGAGTGGTGATAATAAGGTTAGTTTTAAACATGCTAACATGTTAAAATTCTTAAGC
GATTTTTGCAAGGAAAGTTT

Downstream 100 bases:

>100_bases
TTGGTGTGAGATGCATTGATTATAGCAATTTAGGAGCTAAAAGGTTTTTTATTAATGATAACTAGACATAACAACGCTTT
TTATCAGTGGGACTTACAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MDEIKTLLIDFLPLAKYFGIVLIKAVIIACVGFYLSFFLRKKIVKLLSKKDEILANFIAQVAFVLILIITTIITLSTLGV
QTTSIITVLGTAGIAVALALKDSLSSIAGGIILIVLRPFKKGDTVELSGLNGKVESVNLFNTSLRLHDGRLAVLPNRNVA
NSNIINSNNTECRRIEWVCGVGYGSDIELVHKTIKDVIDAMEKIDKNMPTFIGITDFGQSSLNFTIRVWAKIEDGIFNVR
SELIERIKNALDANQIEIPFNKLDISIKNQDSSK

Sequences:

>Translated_274_residues
MDEIKTLLIDFLPLAKYFGIVLIKAVIIACVGFYLSFFLRKKIVKLLSKKDEILANFIAQVAFVLILIITTIITLSTLGV
QTTSIITVLGTAGIAVALALKDSLSSIAGGIILIVLRPFKKGDTVELSGLNGKVESVNLFNTSLRLHDGRLAVLPNRNVA
NSNIINSNNTECRRIEWVCGVGYGSDIELVHKTIKDVIDAMEKIDKNMPTFIGITDFGQSSLNFTIRVWAKIEDGIFNVR
SELIERIKNALDANQIEIPFNKLDISIKNQDSSK
>Mature_274_residues
MDEIKTLLIDFLPLAKYFGIVLIKAVIIACVGFYLSFFLRKKIVKLLSKKDEILANFIAQVAFVLILIITTIITLSTLGV
QTTSIITVLGTAGIAVALALKDSLSSIAGGIILIVLRPFKKGDTVELSGLNGKVESVNLFNTSLRLHDGRLAVLPNRNVA
NSNIINSNNTECRRIEWVCGVGYGSDIELVHKTIKDVIDAMEKIDKNMPTFIGITDFGQSSLNFTIRVWAKIEDGIFNVR
SELIERIKNALDANQIEIPFNKLDISIKNQDSSK

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=259, Percent_Identity=36.2934362934363, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI1786670, Length=220, Percent_Identity=24.0909090909091, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787591, Length=186, Percent_Identity=23.6559139784946, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014
- InterPro:   IPR008910 [H]

Pfam domain/function: PF00924 MS_channel; PF05552 TM_helix [H]

EC number: NA

Molecular weight: Translated: 30194; Mature: 30194

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEIKTLLIDFLPLAKYFGIVLIKAVIIACVGFYLSFFLRKKIVKLLSKKDEILANFIAQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
VAFVLILIITTIITLSTLGVQTTSIITVLGTAGIAVALALKDSLSSIAGGIILIVLRPFK
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCC
KGDTVELSGLNGKVESVNLFNTSLRLHDGRLAVLPNRNVANSNIINSNNTECRRIEWVCG
CCCEEEEECCCCCEEEEEEEEEEEEEECCEEEEECCCCCCCCCCCCCCCCCEEEEEEEEE
VGYGSDIELVHKTIKDVIDAMEKIDKNMPTFIGITDFGQSSLNFTIRVWAKIEDGIFNVR
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEEEEEHHHHHHHHH
SELIERIKNALDANQIEIPFNKLDISIKNQDSSK
HHHHHHHHHHCCCCEEEECHHHEEEEEECCCCCC
>Mature Secondary Structure
MDEIKTLLIDFLPLAKYFGIVLIKAVIIACVGFYLSFFLRKKIVKLLSKKDEILANFIAQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
VAFVLILIITTIITLSTLGVQTTSIITVLGTAGIAVALALKDSLSSIAGGIILIVLRPFK
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCC
KGDTVELSGLNGKVESVNLFNTSLRLHDGRLAVLPNRNVANSNIINSNNTECRRIEWVCG
CCCEEEEECCCCCEEEEEEEEEEEEEECCEEEEECCCCCCCCCCCCCCCCCEEEEEEEEE
VGYGSDIELVHKTIKDVIDAMEKIDKNMPTFIGITDFGQSSLNFTIRVWAKIEDGIFNVR
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEEEEEHHHHHHHHH
SELIERIKNALDANQIEIPFNKLDISIKNQDSSK
HHHHHHHHHHCCCCEEEECHHHEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12522265 [H]