| Definition | Helicobacter acinonychis str. Sheeba chromosome, complete genome. |
|---|---|
| Accession | NC_008229 |
| Length | 1,553,927 |
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The map label for this gene is speA [H]
Identifier: 109947192
GI number: 109947192
Start: 537294
End: 539141
Strand: Direct
Name: speA [H]
Synonym: Hac_0610
Alternate gene names: 109947192
Gene position: 537294-539141 (Clockwise)
Preceding gene: 109947191
Following gene: 109947200
Centisome position: 34.58
GC content: 39.23
Gene sequence:
>1848_bases ATGCAAGAAGTCCATGATTATGGGATTAAATTTTGGAGCAATAACGAATTTAAGATAGAAAAGGGGCTAGTCAAGGTTTG TCATGGCAAAAACCCTGCACTTTTAGAAATCGTTCAAAGCGTGCGCGATAAAGGCTATAGAGGGCCTTTATTGGTGCGCT TCCCCCATTTGGTGCAAAAACAAATCAAAAGCTTGTTTGATGCGTTTTCTTTGGCGATTAAAGAGTATCAATACAGTGGG GCTTTTAAGGCGGTTTTCCCTTTAAAGGTCAATCAAATGCCCTCGTTTGTTTTGCCCTTAGTGCAAGGGGCTAAGGGTTT AAACTATGGCTTAGAAGCTGGGAGTAAATCAGAACTCATCATTGCGATGAGCTACACTAACCCTAAAACCCCCATTACCG TGAATGGCTTTAAAGACAAAGAAATGATTGAGCTTGGCTTTATCGCTAAAAGCATGCAACATGAGATCACTTTAACGATT GAAGGCTTGAATGAATTGAAAACCATTATCGCTGTGGCTAAACAAAACGAGTTTTTAATCTGCCCTAAAATTGGCATTCG CATCCGTTTGCACAGTACTGGCATTGGCGTTTGGGCAAAGAGTGGGGGGATCAATTCTAAATTTGGCCTTAGCAGCACGG AAGTGTTAGAAGCGATGCGCCTTTTAGAAGAAAACGATTTGTTAGAGCATTTTCACATGATACATTTCCACATAGGCTCT CAAATCAGCGATATTTCGCCCTTAAAAAAGGCTTTAAGAGAAGCAGGTAACTTGTATGCAGAATTGCGTAAAATGGGTGC TAAAAATCTTAATAGCGTGAATATTGGAGGGGGGTTAGCCGTAGAATACACCCAACACAAGCACCATCAAGATAAAAACT ACACTTTAGAGGAATTTAGCGCTGATGTGGTGTTTTTATTGAGAGAAATTGTGAAAAATAAGCAAGAAATAGAGCCAGAT ATTTTCATTGAATCAGGCCGTTATATTTCGGCTAACCATGCCGTTTTAGTGGCCCCAGTTTTGGAATTGTTTTCGCATGA ATACAATGAAAAATCCCTAAAAATCAAAGAAAGTGATAACCCCCCTTTGATTGATGAAATGCTAGACTTGCTCGCTAATA TCAATGAAAAAAACGCCATTGAATACTTGCATGATAGCTTTGATCACACCGAGTCGTTATTTACGCTTTTTGATTTGGGC TATATTGATTTGATTGATAGGAGCAATACCGAAGTTTTGGCCCATTTGATCGTCAAAAAAGCGGTGCAGTTGCTTTATTT TAAAGATCATAATGATATTTTACGCATTCAAGAGCAAGTCCAAGAGCGCTATTTATTGAATTGCTCGTTTTTCCAAAGTT TGCCGGATTATTGGGGTTTGAGGCAGAGTTTCCCAGTCATGCCCTTGAATAAATTAGATGAAAAGCCCACTAGGAGCGCG AGCTTGTGGGATATTACTTGCGATAGCGATGGGGAAATCGCTTTTGACTCCACCAAACCCTTGTTTTTGCATGATATAGA TGTGGATGAAGAAGAATACTTTTTAGCGTTCTTTTTAGTGGGAGCGTATCAAGAAGTTTTGGGCATGAAACACAATTTAT TTACGCACCCTACGGAATTTAGCGTGGTTTTTGATGAAAAAGGCGATTATGAAGTGGAAGATATTTGCGAAGCCCAAACG ATTTTAGATGTGTTAGATGATTTAGACTATGACACCAAAGAGATTGAGCGCCTTTTAAAACAAAAAATTGAAGACAACAA CAATTTGGACATGGAAGAAAAGAAAGAAATCATGGGGCGCTTGTATGTCATGTTGAGTGAAAACGGGTATTTGCGCACGA TTTCTTAA
Upstream 100 bases:
>100_bases ATTCAGTCATTCAAATTGAAAAAGTTTATGGAGAAGCGATCAAGGATTTTAAAAACAACCCCAACCTCTTTAAAACTCTA GCGCGATAAAAGGATAAAAG
Downstream 100 bases:
>100_bases ATTGACGGATTAGAGGGCAGTTGAAAAAAGAAAAATTAAGAGAGATTAAAAAAAAGAGATTAAAAAAGGAGACCCCCAAA GAGTAGGGGGGCGGTTAGTT
Product: arginine decarboxylase
Products: NA
Alternate protein names: ADC [H]
Number of amino acids: Translated: 615; Mature: 615
Protein sequence:
>615_residues MQEVHDYGIKFWSNNEFKIEKGLVKVCHGKNPALLEIVQSVRDKGYRGPLLVRFPHLVQKQIKSLFDAFSLAIKEYQYSG AFKAVFPLKVNQMPSFVLPLVQGAKGLNYGLEAGSKSELIIAMSYTNPKTPITVNGFKDKEMIELGFIAKSMQHEITLTI EGLNELKTIIAVAKQNEFLICPKIGIRIRLHSTGIGVWAKSGGINSKFGLSSTEVLEAMRLLEENDLLEHFHMIHFHIGS QISDISPLKKALREAGNLYAELRKMGAKNLNSVNIGGGLAVEYTQHKHHQDKNYTLEEFSADVVFLLREIVKNKQEIEPD IFIESGRYISANHAVLVAPVLELFSHEYNEKSLKIKESDNPPLIDEMLDLLANINEKNAIEYLHDSFDHTESLFTLFDLG YIDLIDRSNTEVLAHLIVKKAVQLLYFKDHNDILRIQEQVQERYLLNCSFFQSLPDYWGLRQSFPVMPLNKLDEKPTRSA SLWDITCDSDGEIAFDSTKPLFLHDIDVDEEEYFLAFFLVGAYQEVLGMKHNLFTHPTEFSVVFDEKGDYEVEDICEAQT ILDVLDDLDYDTKEIERLLKQKIEDNNNLDMEEKKEIMGRLYVMLSENGYLRTIS
Sequences:
>Translated_615_residues MQEVHDYGIKFWSNNEFKIEKGLVKVCHGKNPALLEIVQSVRDKGYRGPLLVRFPHLVQKQIKSLFDAFSLAIKEYQYSG AFKAVFPLKVNQMPSFVLPLVQGAKGLNYGLEAGSKSELIIAMSYTNPKTPITVNGFKDKEMIELGFIAKSMQHEITLTI EGLNELKTIIAVAKQNEFLICPKIGIRIRLHSTGIGVWAKSGGINSKFGLSSTEVLEAMRLLEENDLLEHFHMIHFHIGS QISDISPLKKALREAGNLYAELRKMGAKNLNSVNIGGGLAVEYTQHKHHQDKNYTLEEFSADVVFLLREIVKNKQEIEPD IFIESGRYISANHAVLVAPVLELFSHEYNEKSLKIKESDNPPLIDEMLDLLANINEKNAIEYLHDSFDHTESLFTLFDLG YIDLIDRSNTEVLAHLIVKKAVQLLYFKDHNDILRIQEQVQERYLLNCSFFQSLPDYWGLRQSFPVMPLNKLDEKPTRSA SLWDITCDSDGEIAFDSTKPLFLHDIDVDEEEYFLAFFLVGAYQEVLGMKHNLFTHPTEFSVVFDEKGDYEVEDICEAQT ILDVLDDLDYDTKEIERLLKQKIEDNNNLDMEEKKEIMGRLYVMLSENGYLRTIS >Mature_615_residues MQEVHDYGIKFWSNNEFKIEKGLVKVCHGKNPALLEIVQSVRDKGYRGPLLVRFPHLVQKQIKSLFDAFSLAIKEYQYSG AFKAVFPLKVNQMPSFVLPLVQGAKGLNYGLEAGSKSELIIAMSYTNPKTPITVNGFKDKEMIELGFIAKSMQHEITLTI EGLNELKTIIAVAKQNEFLICPKIGIRIRLHSTGIGVWAKSGGINSKFGLSSTEVLEAMRLLEENDLLEHFHMIHFHIGS QISDISPLKKALREAGNLYAELRKMGAKNLNSVNIGGGLAVEYTQHKHHQDKNYTLEEFSADVVFLLREIVKNKQEIEPD IFIESGRYISANHAVLVAPVLELFSHEYNEKSLKIKESDNPPLIDEMLDLLANINEKNAIEYLHDSFDHTESLFTLFDLG YIDLIDRSNTEVLAHLIVKKAVQLLYFKDHNDILRIQEQVQERYLLNCSFFQSLPDYWGLRQSFPVMPLNKLDEKPTRSA SLWDITCDSDGEIAFDSTKPLFLHDIDVDEEEYFLAFFLVGAYQEVLGMKHNLFTHPTEFSVVFDEKGDYEVEDICEAQT ILDVLDDLDYDTKEIERLLKQKIEDNNNLDMEEKKEIMGRLYVMLSENGYLRTIS
Specific function: Catalyzes the biosynthesis of agmatine from arginine [H]
COG id: COG1166
COG function: function code E; Arginine decarboxylase (spermidine biosynthesis)
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily [H]
Homologues:
Organism=Escherichia coli, GI1789307, Length=615, Percent_Identity=32.6829268292683, Blast_Score=332, Evalue=5e-92,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009006 - InterPro: IPR002985 - InterPro: IPR022643 - InterPro: IPR022644 - InterPro: IPR022653 - InterPro: IPR000183 [H]
Pfam domain/function: PF02784 Orn_Arg_deC_N; PF00278 Orn_DAP_Arg_deC [H]
EC number: =4.1.1.19 [H]
Molecular weight: Translated: 70357; Mature: 70357
Theoretical pI: Translated: 5.02; Mature: 5.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQEVHDYGIKFWSNNEFKIEKGLVKVCHGKNPALLEIVQSVRDKGYRGPLLVRFPHLVQK CCCCHHCCCEEECCCCEEEHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEECHHHHHH QIKSLFDAFSLAIKEYQYSGAFKAVFPLKVNQMPSFVLPLVQGAKGLNYGLEAGSKSELI HHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCEE IAMSYTNPKTPITVNGFKDKEMIELGFIAKSMQHEITLTIEGLNELKTIIAVAKQNEFLI EEEECCCCCCCEEECCCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCEEE CPKIGIRIRLHSTGIGVWAKSGGINSKFGLSSTEVLEAMRLLEENDLLEHFHMIHFHIGS ECCCCEEEEEEECCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCC QISDISPLKKALREAGNLYAELRKMGAKNLNSVNIGGGLAVEYTQHKHHQDKNYTLEEFS CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCEEEEEHHHHCCCCCCCCHHHHH ADVVFLLREIVKNKQEIEPDIFIESGRYISANHAVLVAPVLELFSHEYNEKSLKIKESDN HHHHHHHHHHHCCHHHCCCCEEEECCCEEECCCCCHHHHHHHHHCCCCCCCEEEEECCCC PPLIDEMLDLLANINEKNAIEYLHDSFDHTESLFTLFDLGYIDLIDRSNTEVLAHLIVKK CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCHHHHHHHHHHH AVQLLYFKDHNDILRIQEQVQERYLLNCSFFQSLPDYWGLRQSFPVMPLNKLDEKPTRSA HHHHEEECCCCHHHHHHHHHHHHHHCCHHHHHHCHHHCCCCCCCCCCCCHHCCCCCCCCC SLWDITCDSDGEIAFDSTKPLFLHDIDVDEEEYFLAFFLVGAYQEVLGMKHNLFTHPTEF EEEEEEECCCCCEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCE SVVFDEKGDYEVEDICEAQTILDVLDDLDYDTKEIERLLKQKIEDNNNLDMEEKKEIMGR EEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHH LYVMLSENGYLRTIS EEEEEECCCEEEECC >Mature Secondary Structure MQEVHDYGIKFWSNNEFKIEKGLVKVCHGKNPALLEIVQSVRDKGYRGPLLVRFPHLVQK CCCCHHCCCEEECCCCEEEHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEECHHHHHH QIKSLFDAFSLAIKEYQYSGAFKAVFPLKVNQMPSFVLPLVQGAKGLNYGLEAGSKSELI HHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCEE IAMSYTNPKTPITVNGFKDKEMIELGFIAKSMQHEITLTIEGLNELKTIIAVAKQNEFLI EEEECCCCCCCEEECCCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCEEE CPKIGIRIRLHSTGIGVWAKSGGINSKFGLSSTEVLEAMRLLEENDLLEHFHMIHFHIGS ECCCCEEEEEEECCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCC QISDISPLKKALREAGNLYAELRKMGAKNLNSVNIGGGLAVEYTQHKHHQDKNYTLEEFS CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCEEEEEHHHHCCCCCCCCHHHHH ADVVFLLREIVKNKQEIEPDIFIESGRYISANHAVLVAPVLELFSHEYNEKSLKIKESDN HHHHHHHHHHHCCHHHCCCCEEEECCCEEECCCCCHHHHHHHHHCCCCCCCEEEEECCCC PPLIDEMLDLLANINEKNAIEYLHDSFDHTESLFTLFDLGYIDLIDRSNTEVLAHLIVKK CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCHHHHHHHHHHH AVQLLYFKDHNDILRIQEQVQERYLLNCSFFQSLPDYWGLRQSFPVMPLNKLDEKPTRSA HHHHEEECCCCHHHHHHHHHHHHHHCCHHHHHHCHHHCCCCCCCCCCCCHHCCCCCCCCC SLWDITCDSDGEIAFDSTKPLFLHDIDVDEEEYFLAFFLVGAYQEVLGMKHNLFTHPTEF EEEEEEECCCCCEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCE SVVFDEKGDYEVEDICEAQTILDVLDDLDYDTKEIERLLKQKIEDNNNLDMEEKKEIMGR EEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHH LYVMLSENGYLRTIS EEEEEECCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10567266 [H]