Definition | Helicobacter acinonychis str. Sheeba chromosome, complete genome. |
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Accession | NC_008229 |
Length | 1,553,927 |
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The map label for this gene is 109947135
Identifier: 109947135
GI number: 109947135
Start: 467629
End: 469170
Strand: Direct
Name: 109947135
Synonym: Hac_0544
Alternate gene names: NA
Gene position: 467629-469170 (Clockwise)
Preceding gene: 109947134
Following gene: 109947136
Centisome position: 30.09
GC content: 36.51
Gene sequence:
>1542_bases TTGTTATTCTTTTGTTTTTTGTTGTTGTGTGCAGAAGATAAAAGCCAAGAGTTATTGTCCATACAAAAACAAATGGCTTT GGTGGATAAAAAACTCACTAAAGATGATAATGTGTGGTTGAAGAAATTTGAAAACTATAAGATTTACAACCAAATTTATA CTGAAAAAGAGAGCGTGAGGCAGGAATTAAGGCGCTTGAAATTCCAAAAAAATAAGGATCTCTTAAAGATTAGCACTTTA GAGCATACCTTAAAGGCTTTAGAATCCCAACAAAAAATGTTTGAAAGCTATGGGGTCAATCCTTTTAAGGACTTGATAGA GCGCCCCAATATCCCCAATATCCCCAATATCGCCAACCCTATTGCGATCATTGATGGCATTTCTTTCATTAAAAGCATGC GTTTAAAGCATGAAGACCTTAAAAACAACCAGATTGCTTTAGAAGAGGTTTTGAAGCTTTTAGATGAAAAACACCAGCTT TTAAGTCAATGGCAGGCATTGGATAAAAACGCGAAATTGAGCGATGAGATTTATCAAACTCAAGCCAAACGATTAGAATT GCAAGGGGCTCAAAACATTTTAAAAACCACGATTGGGATCTTTCAAAAAGACAGCGATGAAGCCGTTAGCATTGTAAAAA CCCAAATCAAAAACCAGCTTTTAAAATTGCTTTATGTGTTTTTAACCGCCCTTTTGAGCGTGGTGTTTGCGTGGATTTTA AAAGTCATTTCCAGTAAATACATTGAAAATAACGAGCGCGTTTATACCGTTAATAAAGCCATTAACTTTGTGAATGTGAG CGTGATTGTTTTAATCTTTCTTTTTTCTTATTTAGAAAATGTGACTTATTTAGTCACGGTTTTAGGCTTTGCGAGTGCGG GCTTGGCGATTGCGATGAAAGACTTGTTCATGAGCTTGCTTGGGTGGTTTATTATTTTGATCGGAGGGAGTGTGCATGTG GGCGATAGGGTGCGTATCGCTAAAGGGACTGATATTTTTATTGGCGATGTGTTGGATATTTCTATGTTGCACATTACGAT TTTAGAAGATGTGACCTTAACCACTTATTCTAATAACAGAAGAGCGGGCCGGATTGTTTTTGTGCCTAATAATTATATTT TCACTACCATGTTTGCCAATTACAGCCATTTTGGCATGAAAACGGTTTGGGATGGGGTGGATTTTTGCGTGACATTTGAT TCTGATTTTAAAAAAGCTTCTAAAATTGCACTCAATATCGCGACAGAATTGTCTAAAGAATACACGGATATTACTTATAA ACAGCTCAATAAAATGCGCGATAGGTATTCTTTAAGGAGTTTGAGCGTGAAGCCGCGATGCTTTTTGATGCCTGAAAATA ATGGGATAAAGATTTCAGTGTGGTATCAAACCAATTCGTATGCCACTTTGTCTTTAAGGAGCAAGATTACGGCTGAAATT ATTGAAGCTTTTTTGAAAGAAGAAAATATCCATATCGCTTATACCACCAGCAAATTGCTTAAAGTGGATACTGAGGGCGA TGGCTTTGGGAATAAAAGGTAA
Upstream 100 bases:
>100_bases TCAAATTCATTCTACCTAAAGGCATTGGGGCGTTTGAAATAGCCGCTCATATCCCTAAAGAAACGATTTTAAAGGTGTTA GAAAAATGGCATTAAGGGTA
Downstream 100 bases:
>100_bases CAAGAATGAAAAAAGTCTATTTTAAAACTTTTGGGTGCAGAACGAATCTTTTTGACACGCAAGTGATGGGCGAGAATTTA AAGGATTTTAGCGCGACTTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 513; Mature: 513
Protein sequence:
>513_residues MLFFCFLLLCAEDKSQELLSIQKQMALVDKKLTKDDNVWLKKFENYKIYNQIYTEKESVRQELRRLKFQKNKDLLKISTL EHTLKALESQQKMFESYGVNPFKDLIERPNIPNIPNIANPIAIIDGISFIKSMRLKHEDLKNNQIALEEVLKLLDEKHQL LSQWQALDKNAKLSDEIYQTQAKRLELQGAQNILKTTIGIFQKDSDEAVSIVKTQIKNQLLKLLYVFLTALLSVVFAWIL KVISSKYIENNERVYTVNKAINFVNVSVIVLIFLFSYLENVTYLVTVLGFASAGLAIAMKDLFMSLLGWFIILIGGSVHV GDRVRIAKGTDIFIGDVLDISMLHITILEDVTLTTYSNNRRAGRIVFVPNNYIFTTMFANYSHFGMKTVWDGVDFCVTFD SDFKKASKIALNIATELSKEYTDITYKQLNKMRDRYSLRSLSVKPRCFLMPENNGIKISVWYQTNSYATLSLRSKITAEI IEAFLKEENIHIAYTTSKLLKVDTEGDGFGNKR
Sequences:
>Translated_513_residues MLFFCFLLLCAEDKSQELLSIQKQMALVDKKLTKDDNVWLKKFENYKIYNQIYTEKESVRQELRRLKFQKNKDLLKISTL EHTLKALESQQKMFESYGVNPFKDLIERPNIPNIPNIANPIAIIDGISFIKSMRLKHEDLKNNQIALEEVLKLLDEKHQL LSQWQALDKNAKLSDEIYQTQAKRLELQGAQNILKTTIGIFQKDSDEAVSIVKTQIKNQLLKLLYVFLTALLSVVFAWIL KVISSKYIENNERVYTVNKAINFVNVSVIVLIFLFSYLENVTYLVTVLGFASAGLAIAMKDLFMSLLGWFIILIGGSVHV GDRVRIAKGTDIFIGDVLDISMLHITILEDVTLTTYSNNRRAGRIVFVPNNYIFTTMFANYSHFGMKTVWDGVDFCVTFD SDFKKASKIALNIATELSKEYTDITYKQLNKMRDRYSLRSLSVKPRCFLMPENNGIKISVWYQTNSYATLSLRSKITAEI IEAFLKEENIHIAYTTSKLLKVDTEGDGFGNKR >Mature_513_residues MLFFCFLLLCAEDKSQELLSIQKQMALVDKKLTKDDNVWLKKFENYKIYNQIYTEKESVRQELRRLKFQKNKDLLKISTL EHTLKALESQQKMFESYGVNPFKDLIERPNIPNIPNIANPIAIIDGISFIKSMRLKHEDLKNNQIALEEVLKLLDEKHQL LSQWQALDKNAKLSDEIYQTQAKRLELQGAQNILKTTIGIFQKDSDEAVSIVKTQIKNQLLKLLYVFLTALLSVVFAWIL KVISSKYIENNERVYTVNKAINFVNVSVIVLIFLFSYLENVTYLVTVLGFASAGLAIAMKDLFMSLLGWFIILIGGSVHV GDRVRIAKGTDIFIGDVLDISMLHITILEDVTLTTYSNNRRAGRIVFVPNNYIFTTMFANYSHFGMKTVWDGVDFCVTFD SDFKKASKIALNIATELSKEYTDITYKQLNKMRDRYSLRSLSVKPRCFLMPENNGIKISVWYQTNSYATLSLRSKITAEI IEAFLKEENIHIAYTTSKLLKVDTEGDGFGNKR
Specific function: Unknown
COG id: COG0668
COG function: function code M; Small-conductance mechanosensitive channel
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mscS (TC 1.A.23) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010920 - InterPro: IPR006685 - InterPro: IPR011014 [H]
Pfam domain/function: PF00924 MS_channel [H]
EC number: NA
Molecular weight: Translated: 59008; Mature: 59008
Theoretical pI: Translated: 9.45; Mature: 9.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLFFCFLLLCAEDKSQELLSIQKQMALVDKKLTKDDNVWLKKFENYKIYNQIYTEKESVR CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHCCHHHHH QELRRLKFQKNKDLLKISTLEHTLKALESQQKMFESYGVNPFKDLIERPNIPNIPNIANP HHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCC IAIIDGISFIKSMRLKHEDLKNNQIALEEVLKLLDEKHQLLSQWQALDKNAKLSDEIYQT HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH QAKRLELQGAQNILKTTIGIFQKDSDEAVSIVKTQIKNQLLKLLYVFLTALLSVVFAWIL HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KVISSKYIENNERVYTVNKAINFVNVSVIVLIFLFSYLENVTYLVTVLGFASAGLAIAMK HHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH DLFMSLLGWFIILIGGSVHVGDRVRIAKGTDIFIGDVLDISMLHITILEDVTLTTYSNNR HHHHHHHHHHHHHHCCCEEECCEEEEECCCEEEEECHHHHHHHHEEEECCEEEEEECCCC RAGRIVFVPNNYIFTTMFANYSHFGMKTVWDGVDFCVTFDSDFKKASKIALNIATELSKE CCEEEEEECCCEEEEEEECCCCCCCHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHHHH YTDITYKQLNKMRDRYSLRSLSVKPRCFLMPENNGIKISVWYQTNSYATLSLRSKITAEI HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEECCCEEEEEHHHHHHHHH IEAFLKEENIHIAYTTSKLLKVDTEGDGFGNKR HHHHHCCCCEEEEEEECEEEEEECCCCCCCCCC >Mature Secondary Structure MLFFCFLLLCAEDKSQELLSIQKQMALVDKKLTKDDNVWLKKFENYKIYNQIYTEKESVR CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHCCHHHHH QELRRLKFQKNKDLLKISTLEHTLKALESQQKMFESYGVNPFKDLIERPNIPNIPNIANP HHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCC IAIIDGISFIKSMRLKHEDLKNNQIALEEVLKLLDEKHQLLSQWQALDKNAKLSDEIYQT HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH QAKRLELQGAQNILKTTIGIFQKDSDEAVSIVKTQIKNQLLKLLYVFLTALLSVVFAWIL HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KVISSKYIENNERVYTVNKAINFVNVSVIVLIFLFSYLENVTYLVTVLGFASAGLAIAMK HHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH DLFMSLLGWFIILIGGSVHVGDRVRIAKGTDIFIGDVLDISMLHITILEDVTLTTYSNNR HHHHHHHHHHHHHHCCCEEECCEEEEECCCEEEEECHHHHHHHHEEEECCEEEEEECCCC RAGRIVFVPNNYIFTTMFANYSHFGMKTVWDGVDFCVTFDSDFKKASKIALNIATELSKE CCEEEEEECCCEEEEEEECCCCCCCHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHHHH YTDITYKQLNKMRDRYSLRSLSVKPRCFLMPENNGIKISVWYQTNSYATLSLRSKITAEI HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEECCCEEEEEHHHHHHHHH IEAFLKEENIHIAYTTSKLLKVDTEGDGFGNKR HHHHHCCCCEEEEEEECEEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]