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The map label for this gene is mjaVIP

Identifier: 109947113

GI number: 109947113

Start: 445987

End: 446709

Strand: Direct

Name: mjaVIP

Synonym: Hac_0519

Alternate gene names: NA

Gene position: 445987-446709 (Clockwise)

Preceding gene: 109947112

Following gene: 109947114

Centisome position: 28.7

GC content: 31.95

Gene sequence:

>723_bases
TTGATTGATTTCTATAAGGTGTTTGAAGTGAGTTTAGCCGATACGATTTTAGAGCGTTTTAAAGATTTTATGAGAGAACA
GCCTGAGCCTTACAAATTTTTGCAAGTTTTTTATACGCAAGAAAAAGAACGTTTTTTGAATAGTAAAATAAACGATTATA
TCCAGCAAAATAAAAGCAAAGAAGAGGCTAGTATTTTAGCCAGACAAGGCTTTGTGAGTGTTATTGGAAGAGCGTTAGAA
AAAATCATAGAACTTTTATTAAAAGATTTTTGTATTAAAAACAATGCAAAAATGACGAACGATAAAACCTTAAGGGCTAA
GCGCATTAATGGCGAGTTGGATAGAGTCAAACGGGCTTTATTGGTGCATTTTGGAGAATATAGCGTTTTACCTGATGGAG
ATATTGTTCTTTATCAAATCAATAAGGATAATATCAAAATTCTAGCGATTTTATCGGTAAAAAATTCGTTTAGAGAGCGT
TTCACAGAAACGCCTTATTGGAAATTAAAACTTTTACAATCGCCTATAACTTCTCACATTAAAGTCTTTATGATAACACC
GGATAACGATGATGAGATCAGTTTTAAAGACAAGCCTAAAAAAGCTAGGATCGTTATGGAGCATGAATTAGATGGCATCT
ATTTAGCCCAAAGTGGTTTTGATAAAAGTTTTAAAATCAAGGGCATAGAAAATTTACTAGAAGACTTAAAAAGGCTTTTA
TGA

Upstream 100 bases:

>100_bases
CTGAAATCTCCCTGCCTTGTCATGCGAATTTGGATTTAGAAAGCGTGAAAAGCATCGCTCATGGCGTTTTAAAGACTTTT
GAGGGTTTTGTATTATAAGT

Downstream 100 bases:

>100_bases
AACCTTATTTTAGTTTAGATAAATTGCATTTATACCATGGCGATGCGAGCGTTTTAGAGACTTTTGAAAAAGGTTTTTAT
GATTTGTGTGTTACTTCACC

Product: endonuclease MjaVIP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MIDFYKVFEVSLADTILERFKDFMREQPEPYKFLQVFYTQEKERFLNSKINDYIQQNKSKEEASILARQGFVSVIGRALE
KIIELLLKDFCIKNNAKMTNDKTLRAKRINGELDRVKRALLVHFGEYSVLPDGDIVLYQINKDNIKILAILSVKNSFRER
FTETPYWKLKLLQSPITSHIKVFMITPDNDDEISFKDKPKKARIVMEHELDGIYLAQSGFDKSFKIKGIENLLEDLKRLL

Sequences:

>Translated_240_residues
MIDFYKVFEVSLADTILERFKDFMREQPEPYKFLQVFYTQEKERFLNSKINDYIQQNKSKEEASILARQGFVSVIGRALE
KIIELLLKDFCIKNNAKMTNDKTLRAKRINGELDRVKRALLVHFGEYSVLPDGDIVLYQINKDNIKILAILSVKNSFRER
FTETPYWKLKLLQSPITSHIKVFMITPDNDDEISFKDKPKKARIVMEHELDGIYLAQSGFDKSFKIKGIENLLEDLKRLL
>Mature_240_residues
MIDFYKVFEVSLADTILERFKDFMREQPEPYKFLQVFYTQEKERFLNSKINDYIQQNKSKEEASILARQGFVSVIGRALE
KIIELLLKDFCIKNNAKMTNDKTLRAKRINGELDRVKRALLVHFGEYSVLPDGDIVLYQINKDNIKILAILSVKNSFRER
FTETPYWKLKLLQSPITSHIKVFMITPDNDDEISFKDKPKKARIVMEHELDGIYLAQSGFDKSFKIKGIENLLEDLKRLL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To M.jannaschii MJ1208.1 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28222; Mature: 28222

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDFYKVFEVSLADTILERFKDFMREQPEPYKFLQVFYTQEKERFLNSKINDYIQQNKSK
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
EEASILARQGFVSVIGRALEKIIELLLKDFCIKNNAKMTNDKTLRAKRINGELDRVKRAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCHHHHHHHHH
LVHFGEYSVLPDGDIVLYQINKDNIKILAILSVKNSFRERFTETPYWKLKLLQSPITSHI
HHHCCCEEECCCCCEEEEEECCCCEEEEEEEEHHHHHHHHHCCCCHHHHHHHHCCCCCCE
KVFMITPDNDDEISFKDKPKKARIVMEHELDGIYLAQSGFDKSFKIKGIENLLEDLKRLL
EEEEEECCCCCCCCCCCCCCHHEEEEEECCCEEEEECCCCCCCEEECCHHHHHHHHHHHC
>Mature Secondary Structure
MIDFYKVFEVSLADTILERFKDFMREQPEPYKFLQVFYTQEKERFLNSKINDYIQQNKSK
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
EEASILARQGFVSVIGRALEKIIELLLKDFCIKNNAKMTNDKTLRAKRINGELDRVKRAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCHHHHHHHHH
LVHFGEYSVLPDGDIVLYQINKDNIKILAILSVKNSFRERFTETPYWKLKLLQSPITSHI
HHHCCCEEECCCCCEEEEEECCCCEEEEEEEEHHHHHHHHHCCCCHHHHHHHHCCCCCCE
KVFMITPDNDDEISFKDKPKKARIVMEHELDGIYLAQSGFDKSFKIKGIENLLEDLKRLL
EEEEEECCCCCCCCCCCCCCHHEEEEEECCCEEEEECCCCCCCEEECCHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9252185 [H]