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The map label for this gene is hpcB [H]

Identifier: 108812520

GI number: 108812520

Start: 2641362

End: 2642219

Strand: Reverse

Name: hpcB [H]

Synonym: YPN_2359

Alternate gene names: 108812520

Gene position: 2642219-2641362 (Counterclockwise)

Preceding gene: 108812521

Following gene: 108812519

Centisome position: 58.27

GC content: 48.95

Gene sequence:

>858_bases
ATGGGAAAATTAGCATTAGCAGCAAAAATCACCCATGTGCCTTCCATGTATCTGTCTGAGTTACCGGGAAAGCACCACGG
CTGCCGTCAGGCAGCGATCAATGGTCATCTTGAAATTAGTCGGCGCTGCCGTGAACAAGGGGTTGATACTCTTATTGTTT
TTGATACCCATTGGCTGGTGAACAGTGCGTATCACATTAATTGCAGTGACTCTTTTTCCGGGGTTTATACCAGTAATGAA
CTGCCACATTTCATTCGCGATATGGCTTATGAATATGAGGGCAACCCCGCGCTGGGGCAAATGATTGCCGCCGAAGCCTG
CAAGTTGGGGGTTCGTGCACAGGCCCACAATATTCCGAGTTTAAAGCTGGAATATGGCACGCTGGTCCCTATGCGTTATA
TGAATAGCGATAAGCACTTTAAAGTGATCTCCATTTCGGCTTTCTGTACCGTTCATGCCTTTGATGACAGCCGTAACCTG
GGTCAGGCCATCATCAACGCCATTGAACACTATGATGGCATCGTTGCAGTTTTAGCCAGCGGCTCTCTCTCACATCGCTT
TATTGATGATCAACGCGCTGAAGAAGGGATGAATAGCTACACGCGCGAATTCGATCATCAAATGGATGAGCGGGTCGTCG
AGCTCTGGCGAGAAGGTAAATTCAGCGAGTTCTGCCAAATGTTACCGGAATATGCCCAGTACTGTTTTGGCGAGGGCAAT
ATGCACGATACCGTCATGCTGCTCGGGATGCTGGGATGGGATAAATACGATGGCAAGGTGGAGTTTGTCACCGATCTGTT
TGCCAGTTCGGGTACCGGGCAGGTGAATGCGATATTCCCATTGGCCGTTTACGGGTAA

Upstream 100 bases:

>100_bases
GTTAAATCGCAATCAATATCAGAGAGGCTTATCCCCTGATAATCGACGGTTTCGTGCGGATTTTATCAAGAAAACCCACT
GAGTTTTCGAGCGAGGATGT

Downstream 100 bases:

>100_bases
ATCTCACTGATAAGGGGAGAGGCTATGGCGCATTTCTACGCAGAATGTACTGACAACATCCGTGAACAGGCCGAATTACC
CGTCTTGTTTTCTAACGTAA

Product: 3,4-dihydroxyphenylacetate 2,3-dioxygenase

Products: NA

Alternate protein names: Homoprotocatechuate 2,3-dioxygenase; HPC dioxygenase [H]

Number of amino acids: Translated: 285; Mature: 284

Protein sequence:

>285_residues
MGKLALAAKITHVPSMYLSELPGKHHGCRQAAINGHLEISRRCREQGVDTLIVFDTHWLVNSAYHINCSDSFSGVYTSNE
LPHFIRDMAYEYEGNPALGQMIAAEACKLGVRAQAHNIPSLKLEYGTLVPMRYMNSDKHFKVISISAFCTVHAFDDSRNL
GQAIINAIEHYDGIVAVLASGSLSHRFIDDQRAEEGMNSYTREFDHQMDERVVELWREGKFSEFCQMLPEYAQYCFGEGN
MHDTVMLLGMLGWDKYDGKVEFVTDLFASSGTGQVNAIFPLAVYG

Sequences:

>Translated_285_residues
MGKLALAAKITHVPSMYLSELPGKHHGCRQAAINGHLEISRRCREQGVDTLIVFDTHWLVNSAYHINCSDSFSGVYTSNE
LPHFIRDMAYEYEGNPALGQMIAAEACKLGVRAQAHNIPSLKLEYGTLVPMRYMNSDKHFKVISISAFCTVHAFDDSRNL
GQAIINAIEHYDGIVAVLASGSLSHRFIDDQRAEEGMNSYTREFDHQMDERVVELWREGKFSEFCQMLPEYAQYCFGEGN
MHDTVMLLGMLGWDKYDGKVEFVTDLFASSGTGQVNAIFPLAVYG
>Mature_284_residues
GKLALAAKITHVPSMYLSELPGKHHGCRQAAINGHLEISRRCREQGVDTLIVFDTHWLVNSAYHINCSDSFSGVYTSNEL
PHFIRDMAYEYEGNPALGQMIAAEACKLGVRAQAHNIPSLKLEYGTLVPMRYMNSDKHFKVISISAFCTVHAFDDSRNLG
QAIINAIEHYDGIVAVLASGSLSHRFIDDQRAEEGMNSYTREFDHQMDERVVELWREGKFSEFCQMLPEYAQYCFGEGNM
HDTVMLLGMLGWDKYDGKVEFVTDLFASSGTGQVNAIFPLAVYG

Specific function: Transforms homoprotocatechuic acid (HPC) into 5- carboxymethyl-2-hydroxy-muconic semialdehyde (CHMS) [H]

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011984
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: =1.13.11.15 [H]

Molecular weight: Translated: 31978; Mature: 31846

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKLALAAKITHVPSMYLSELPGKHHGCRQAAINGHLEISRRCREQGVDTLIVFDTHWLV
CCCHHHHHHHHHCHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHCCCCEEEEEECHHHH
NSAYHINCSDSFSGVYTSNELPHFIRDMAYEYEGNPALGQMIAAEACKLGVRAQAHNIPS
CCEEEEECCCCCCCCEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHCCCCCC
LKLEYGTLVPMRYMNSDKHFKVISISAFCTVHAFDDSRNLGQAIINAIEHYDGIVAVLAS
EEEECCCCCCHHHCCCCCCEEEEEEEEEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEC
GSLSHRFIDDQRAEEGMNSYTREFDHQMDERVVELWREGKFSEFCQMLPEYAQYCFGEGN
CCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC
MHDTVMLLGMLGWDKYDGKVEFVTDLFASSGTGQVNAIFPLAVYG
CHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCEEEEEEEEECC
>Mature Secondary Structure 
GKLALAAKITHVPSMYLSELPGKHHGCRQAAINGHLEISRRCREQGVDTLIVFDTHWLV
CCHHHHHHHHHCHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHCCCCEEEEEECHHHH
NSAYHINCSDSFSGVYTSNELPHFIRDMAYEYEGNPALGQMIAAEACKLGVRAQAHNIPS
CCEEEEECCCCCCCCEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHCCCCCC
LKLEYGTLVPMRYMNSDKHFKVISISAFCTVHAFDDSRNLGQAIINAIEHYDGIVAVLAS
EEEECCCCCCHHHCCCCCCEEEEEEEEEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEC
GSLSHRFIDDQRAEEGMNSYTREFDHQMDERVVELWREGKFSEFCQMLPEYAQYCFGEGN
CCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC
MHDTVMLLGMLGWDKYDGKVEFVTDLFASSGTGQVNAIFPLAVYG
CHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2261999 [H]