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The map label for this gene is rbsC [H]

Identifier: 108812473

GI number: 108812473

Start: 2592186

End: 2593265

Strand: Reverse

Name: rbsC [H]

Synonym: YPN_2312

Alternate gene names: 108812473

Gene position: 2593265-2592186 (Counterclockwise)

Preceding gene: 108812474

Following gene: 108812472

Centisome position: 57.19

GC content: 50.37

Gene sequence:

>1080_bases
ATGAAAGTTCAAACACGAATGGGCTGCAAACAATTAACTCGCCGTATCAAACAATTAACTCGCCGTATGTTGAACGATAA
GCAACTTAACTTCTTGGTCATGGTCAATATGTTGGTTATTACGGTGGCCGCTACCCTTACCCAAGGGGCCTTTGTCGATC
TCTACAATCTACAAACGATGGCGGGGCAGGTCCCTGAATTGGGCTTGCTGGCGATGGGGGGCATGCTGGCCATGATCGTG
GGTAATGGGGGGATTGATCTCTCGGGTATCGCTCTCGCTAATCTGGCGGCGGTAGTCGCCGGCACGCTCACACCGGGGTG
GGTCAATGCTGTTGATAGCCCTTTGCTGTTTACCGTGGTTTTTGTCTTATGCGCCTTGTTGGTCGGTCTGACCGGGGGGC
TAATCAATGGGGTGCTCATTGCTTACGCTAAACTCACGCCGATCCTCTGCACCTTAGGCACTCAACTTATTTTCACCGGC
TTTGCTGTCGTGATTTCTCATGGTAGCGGCGTTAAGATTGGTTTTATTGAACCGCTGTCCTTTATTGGTGATGGCCTTAT
TGCCAATATTCCGTTCTGTTTTGCGCTGTTTATCCTCCTCGCCACGTTGTTAGGTCTTTGGTTACGTTTTAGTGCGACCG
GGATACGGCTATATCTCTTGGGAACCAATCTTAAAGCTGCACAGTATATTGGCATTGCGCAACAACGGTTGCTGGTCGTC
ATCTATACCTTATCAGGCACTTTAGCCGCTATCGCCGGCATTATTATTGCCGCCCGTTCTACCAGCGCTACCGCCGATTA
CGGTAGCTCTTATGTGCTGATTGCTATTTTGATCGCTGTGATGGCTGGGGTCCGCCCAGAGGGGGGATATGGGCGAATGG
GCTGCCTATTGCTATCGGCTACCGCCCTCCAGTTTCTTTCCAGTACCTTTACTTTTCTGGACGTCTCCAGCTTTTTCCGC
GACTGCGCTTGGGGCGCGTTGTTGCTGTTCTTCATTATTTTTTCCCGCATTAATCCCTTGGATTTTGTTAAATCGTTATG
GCGAAAAAATACCCCGTCAGTGCAATCCCCCGTGCGCTGA

Upstream 100 bases:

>100_bases
CCGATATAAATCCTGAGGGGAGCACTGATCAGGAGCCTCAAACCGTTATCGTGATTCAAACCGTTACCGTAATTCAAACA
GTATGGGGGTTCAAACTGTT

Downstream 100 bases:

>100_bases
TGAGCGGTGTTCCTGGGGGAAATCAAATGAGGAAACACCATTATGATGATTAAAAAGTTGTGTCTCATTGCCGCCCTCGT
ATTCAGCCTCGGGATCATGG

Product: sugar transport system permease protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 359; Mature: 359

Protein sequence:

>359_residues
MKVQTRMGCKQLTRRIKQLTRRMLNDKQLNFLVMVNMLVITVAATLTQGAFVDLYNLQTMAGQVPELGLLAMGGMLAMIV
GNGGIDLSGIALANLAAVVAGTLTPGWVNAVDSPLLFTVVFVLCALLVGLTGGLINGVLIAYAKLTPILCTLGTQLIFTG
FAVVISHGSGVKIGFIEPLSFIGDGLIANIPFCFALFILLATLLGLWLRFSATGIRLYLLGTNLKAAQYIGIAQQRLLVV
IYTLSGTLAAIAGIIIAARSTSATADYGSSYVLIAILIAVMAGVRPEGGYGRMGCLLLSATALQFLSSTFTFLDVSSFFR
DCAWGALLLFFIIFSRINPLDFVKSLWRKNTPSVQSPVR

Sequences:

>Translated_359_residues
MKVQTRMGCKQLTRRIKQLTRRMLNDKQLNFLVMVNMLVITVAATLTQGAFVDLYNLQTMAGQVPELGLLAMGGMLAMIV
GNGGIDLSGIALANLAAVVAGTLTPGWVNAVDSPLLFTVVFVLCALLVGLTGGLINGVLIAYAKLTPILCTLGTQLIFTG
FAVVISHGSGVKIGFIEPLSFIGDGLIANIPFCFALFILLATLLGLWLRFSATGIRLYLLGTNLKAAQYIGIAQQRLLVV
IYTLSGTLAAIAGIIIAARSTSATADYGSSYVLIAILIAVMAGVRPEGGYGRMGCLLLSATALQFLSSTFTFLDVSSFFR
DCAWGALLLFFIIFSRINPLDFVKSLWRKNTPSVQSPVR
>Mature_359_residues
MKVQTRMGCKQLTRRIKQLTRRMLNDKQLNFLVMVNMLVITVAATLTQGAFVDLYNLQTMAGQVPELGLLAMGGMLAMIV
GNGGIDLSGIALANLAAVVAGTLTPGWVNAVDSPLLFTVVFVLCALLVGLTGGLINGVLIAYAKLTPILCTLGTQLIFTG
FAVVISHGSGVKIGFIEPLSFIGDGLIANIPFCFALFILLATLLGLWLRFSATGIRLYLLGTNLKAAQYIGIAQQRLLVV
IYTLSGTLAAIAGIIIAARSTSATADYGSSYVLIAILIAVMAGVRPEGGYGRMGCLLLSATALQFLSSTFTFLDVSSFFR
DCAWGALLLFFIIFSRINPLDFVKSLWRKNTPSVQSPVR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=289, Percent_Identity=28.719723183391, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI145693152, Length=204, Percent_Identity=33.3333333333333, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1790524, Length=334, Percent_Identity=26.3473053892216, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788471, Length=205, Percent_Identity=34.1463414634146, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787794, Length=285, Percent_Identity=25.6140350877193, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1788896, Length=197, Percent_Identity=28.9340101522843, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787793, Length=289, Percent_Identity=28.3737024221453, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 38284; Mature: 38284

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVQTRMGCKQLTRRIKQLTRRMLNDKQLNFLVMVNMLVITVAATLTQGAFVDLYNLQTM
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHH
AGQVPELGLLAMGGMLAMIVGNGGIDLSGIALANLAAVVAGTLTPGWVNAVDSPLLFTVV
HCCCCCHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHH
FVLCALLVGLTGGLINGVLIAYAKLTPILCTLGTQLIFTGFAVVISHGSGVKIGFIEPLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHH
FIGDGLIANIPFCFALFILLATLLGLWLRFSATGIRLYLLGTNLKAAQYIGIAQQRLLVV
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHEEE
IYTLSGTLAAIAGIIIAARSTSATADYGSSYVLIAILIAVMAGVRPEGGYGRMGCLLLSA
EEHHHHHHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
TALQFLSSTFTFLDVSSFFRDCAWGALLLFFIIFSRINPLDFVKSLWRKNTPSVQSPVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKVQTRMGCKQLTRRIKQLTRRMLNDKQLNFLVMVNMLVITVAATLTQGAFVDLYNLQTM
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHH
AGQVPELGLLAMGGMLAMIVGNGGIDLSGIALANLAAVVAGTLTPGWVNAVDSPLLFTVV
HCCCCCHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHH
FVLCALLVGLTGGLINGVLIAYAKLTPILCTLGTQLIFTGFAVVISHGSGVKIGFIEPLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHH
FIGDGLIANIPFCFALFILLATLLGLWLRFSATGIRLYLLGTNLKAAQYIGIAQQRLLVV
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHEEE
IYTLSGTLAAIAGIIIAARSTSATADYGSSYVLIAILIAVMAGVRPEGGYGRMGCLLLSA
EEHHHHHHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
TALQFLSSTFTFLDVSSFFRDCAWGALLLFFIIFSRINPLDFVKSLWRKNTPSVQSPVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]