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The map label for this gene is lsrB [H]

Identifier: 108812472

GI number: 108812472

Start: 2591148

End: 2592143

Strand: Reverse

Name: lsrB [H]

Synonym: YPN_2311

Alternate gene names: 108812472

Gene position: 2592143-2591148 (Counterclockwise)

Preceding gene: 108812473

Following gene: 108812471

Centisome position: 57.16

GC content: 50.7

Gene sequence:

>996_bases
ATGATGATTAAAAAGTTGTGTCTCATTGCCGCCCTCGTATTCAGCCTCGGGATCATGGGGGCTTATGCTCAACGGAGCCA
ATCGATTGTTACTGTCGTTAAAGTTATTGGTGAACCTTGGTATACCCGCATGGGGGAAGGGGCTAAAGAGTTTGGTGATG
AAAATCCGAGCATCAGTACCCGCACGGTCGGCCCTGCAAGGGCCGATTCCGCCTTACAGCTGCGCATCGTTGAAGACTTG
ATCGCCAAAAAAGTGGATGCGTTGGCCGTTGCCCCCATGGATCCGAGCACACTCGAAGGTGCGCTTAAGAAGGCAATGAG
TCGGGGCATCATCGTCGTGACCAACGAAGCCTATGACATGGTCAATATGCACGCGGATATTGAAGCGGTCGATAACGCCA
CGTTTGGCGCAAAAATGAATGAGGGGCTGGTTAACTGTATGGGCGAAAGCGGTAAGTGGACCACCTTTGTCGGTTCACTC
GGCACCAATAACCATGTGCTTTGGGCCAAAAGTGCCGCAGTTAATGCCCAAAAATACCCCAATATGACGCTGGTGGATCC
ATTGAATGAATCCTTTAATGATGCGAATAGAGCTTATGACAAAGCCAAAGAAATTATGCGCAAATATCCGGATATCAAAG
GGTTTCAGGGGCATTCGGCCATTGATGTTATCGGCATTGGTCGAGCGGTAGAAGAGGCCGGTCTGCAAGGCAAGATATGC
GTCTTTGGGATCGGCCTGCCGCAAGACTCTGGCAAGTATCTGGACAGTGGTGCGATCAACGGCATCAGTTTCTGGGATCC
TAAAGATGCCAGCCTGGCGATGGATACCGTCGCCAAGCTTCTGCTCGATAAAAAACCCCTCACTGATGGGATGAATCTGG
GGGTGCCGGGCTATGAGAACGTCGCCATCAGGAAAGGAAAAGGTGACGGTGTTTTGGTTATCGGTGATGCGGCAAAGTTT
GTTGATAAGACCAACTGGCAGCAATACCCATTCTGA

Upstream 100 bases:

>100_bases
TTTTGTTAAATCGTTATGGCGAAAAAATACCCCGTCAGTGCAATCCCCCGTGCGCTGATGAGCGGTGTTCCTGGGGGAAA
TCAAATGAGGAAACACCATT

Downstream 100 bases:

>100_bases
TGAGTGGGACCAATCATAAACGATGCCGCTTAAGTGGCACGGGGCGTGTTGATGGAGGATCACCCATGGACGTTTCCATA
GACCAACGCGCCATGGCGGC

Product: sugar-binding periplasmic protein

Products: NA

Alternate protein names: AI-2-binding protein lsrB [H]

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MMIKKLCLIAALVFSLGIMGAYAQRSQSIVTVVKVIGEPWYTRMGEGAKEFGDENPSISTRTVGPARADSALQLRIVEDL
IAKKVDALAVAPMDPSTLEGALKKAMSRGIIVVTNEAYDMVNMHADIEAVDNATFGAKMNEGLVNCMGESGKWTTFVGSL
GTNNHVLWAKSAAVNAQKYPNMTLVDPLNESFNDANRAYDKAKEIMRKYPDIKGFQGHSAIDVIGIGRAVEEAGLQGKIC
VFGIGLPQDSGKYLDSGAINGISFWDPKDASLAMDTVAKLLLDKKPLTDGMNLGVPGYENVAIRKGKGDGVLVIGDAAKF
VDKTNWQQYPF

Sequences:

>Translated_331_residues
MMIKKLCLIAALVFSLGIMGAYAQRSQSIVTVVKVIGEPWYTRMGEGAKEFGDENPSISTRTVGPARADSALQLRIVEDL
IAKKVDALAVAPMDPSTLEGALKKAMSRGIIVVTNEAYDMVNMHADIEAVDNATFGAKMNEGLVNCMGESGKWTTFVGSL
GTNNHVLWAKSAAVNAQKYPNMTLVDPLNESFNDANRAYDKAKEIMRKYPDIKGFQGHSAIDVIGIGRAVEEAGLQGKIC
VFGIGLPQDSGKYLDSGAINGISFWDPKDASLAMDTVAKLLLDKKPLTDGMNLGVPGYENVAIRKGKGDGVLVIGDAAKF
VDKTNWQQYPF
>Mature_331_residues
MMIKKLCLIAALVFSLGIMGAYAQRSQSIVTVVKVIGEPWYTRMGEGAKEFGDENPSISTRTVGPARADSALQLRIVEDL
IAKKVDALAVAPMDPSTLEGALKKAMSRGIIVVTNEAYDMVNMHADIEAVDNATFGAKMNEGLVNCMGESGKWTTFVGSL
GTNNHVLWAKSAAVNAQKYPNMTLVDPLNESFNDANRAYDKAKEIMRKYPDIKGFQGHSAIDVIGIGRAVEEAGLQGKIC
VFGIGLPQDSGKYLDSGAINGISFWDPKDASLAMDTVAKLLLDKKPLTDGMNLGVPGYENVAIRKGKGDGVLVIGDAAKF
VDKTNWQQYPF

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Binds AI-2 and delivers it to the lsrC and lsrD permeases [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787795, Length=344, Percent_Identity=22.6744186046512, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790526, Length=250, Percent_Identity=26, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35613; Mature: 35613

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMIKKLCLIAALVFSLGIMGAYAQRSQSIVTVVKVIGEPWYTRMGEGAKEFGDENPSIST
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHCCCCCCCEE
RTVGPARADSALQLRIVEDLIAKKVDALAVAPMDPSTLEGALKKAMSRGIIVVTNEAYDM
EECCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHCCEEEEECCCCCC
VNMHADIEAVDNATFGAKMNEGLVNCMGESGKWTTFVGSLGTNNHVLWAKSAAVNAQKYP
CCCCCCHHHHCCCCCCCHHHCCHHHHCCCCCCEEEEEECCCCCCEEEEECHHHCCHHHCC
NMTLVDPLNESFNDANRAYDKAKEIMRKYPDIKGFQGHSAIDVIGIGRAVEEAGLQGKIC
CCEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHCCCCCCEE
VFGIGLPQDSGKYLDSGAINGISFWDPKDASLAMDTVAKLLLDKKPLTDGMNLGVPGYEN
EEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
VAIRKGKGDGVLVIGDAAKFVDKTNWQQYPF
EEEEECCCCCEEEEECHHHHHHCCCCCCCCC
>Mature Secondary Structure
MMIKKLCLIAALVFSLGIMGAYAQRSQSIVTVVKVIGEPWYTRMGEGAKEFGDENPSIST
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHCCCCCCCEE
RTVGPARADSALQLRIVEDLIAKKVDALAVAPMDPSTLEGALKKAMSRGIIVVTNEAYDM
EECCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHCCEEEEECCCCCC
VNMHADIEAVDNATFGAKMNEGLVNCMGESGKWTTFVGSLGTNNHVLWAKSAAVNAQKYP
CCCCCCHHHHCCCCCCCHHHCCHHHHCCCCCCEEEEEECCCCCCEEEEECHHHCCHHHCC
NMTLVDPLNESFNDANRAYDKAKEIMRKYPDIKGFQGHSAIDVIGIGRAVEEAGLQGKIC
CCEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHCCCCCCEE
VFGIGLPQDSGKYLDSGAINGISFWDPKDASLAMDTVAKLLLDKKPLTDGMNLGVPGYEN
EEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
VAIRKGKGDGVLVIGDAAKFVDKTNWQQYPF
EEEEECCCCCEEEEECHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA