Definition | Yersinia pestis Nepal516, complete genome. |
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Accession | NC_008149 |
Length | 4,534,590 |
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The map label for this gene is 108812291
Identifier: 108812291
GI number: 108812291
Start: 2405877
End: 2406392
Strand: Reverse
Name: 108812291
Synonym: YPN_2129
Alternate gene names: NA
Gene position: 2406392-2405877 (Counterclockwise)
Preceding gene: 108812292
Following gene: 108812290
Centisome position: 53.07
GC content: 51.94
Gene sequence:
>516_bases ATGAATTTACAGCAACAACTCGCCTACTGCCAGCAGCACCAACAACGCTTGCAACTGAGGCATTTCGATAACGAAACCGC CTGGCAGCTAGGCGAAAAAATAAAGCGACAGGCAGAGAAACAAGGCGTGGCACTGGCTATTGATATCACCGTGAATCATC AAACGCTCTTTAGCTATGCGATGGCGGGCACCTGTGCCGAGAACCAAGATTGGCTGCGGCGTAAACGTAATGTCGTGGAG TTACTCAGCACCAGTTCCTATGCTGCCGGGTTGATGTTACAGCAGCGAGAGACCTCACTCGACGCTCGCTATGGCGTGAG TCTGCGGGATTACGCCGCATTGGGTGGTGCTTTCCCGCTGCAAATTAAACAGGCAGGTATTATCGGCAGCGTTAATGTTT CCGGTGCACCGCACTTGGATGACCACAATTTACTGTTACAGGTACTGGCCGACTTTGTCGGCCTGCCCACTGGCAGCATT GAACTTTTGACCCCATTAACCCCATTGAGCGCATAA
Upstream 100 bases:
>100_bases GTGATGTCGAGGTGAAATCTACAGGGAAAGCTATCGCTGACAACGGTTTGACTAAAGCGAAACGTGCGTAAGCCGATGCC ATTTATCACCGGAGAATCTG
Downstream 100 bases:
>100_bases GGAATGGAGATGAACCCCATTATCACCCGTGTCACGCAGCGTATCATTGCGCGCTCAGCGGCCACACGCACGGCATATCT GCAACGTATCAGTGCAGCAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 171; Mature: 171
Protein sequence:
>171_residues MNLQQQLAYCQQHQQRLQLRHFDNETAWQLGEKIKRQAEKQGVALAIDITVNHQTLFSYAMAGTCAENQDWLRRKRNVVE LLSTSSYAAGLMLQQRETSLDARYGVSLRDYAALGGAFPLQIKQAGIIGSVNVSGAPHLDDHNLLLQVLADFVGLPTGSI ELLTPLTPLSA
Sequences:
>Translated_171_residues MNLQQQLAYCQQHQQRLQLRHFDNETAWQLGEKIKRQAEKQGVALAIDITVNHQTLFSYAMAGTCAENQDWLRRKRNVVE LLSTSSYAAGLMLQQRETSLDARYGVSLRDYAALGGAFPLQIKQAGIIGSVNVSGAPHLDDHNLLLQVLADFVGLPTGSI ELLTPLTPLSA >Mature_171_residues MNLQQQLAYCQQHQQRLQLRHFDNETAWQLGEKIKRQAEKQGVALAIDITVNHQTLFSYAMAGTCAENQDWLRRKRNVVE LLSTSSYAAGLMLQQRETSLDARYGVSLRDYAALGGAFPLQIKQAGIIGSVNVSGAPHLDDHNLLLQVLADFVGLPTGSI ELLTPLTPLSA
Specific function: Unknown
COG id: COG4702
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0303 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005624 - InterPro: IPR010371 [H]
Pfam domain/function: PF03928 DUF336 [H]
EC number: NA
Molecular weight: Translated: 18914; Mature: 18914
Theoretical pI: Translated: 7.06; Mature: 7.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLQQQLAYCQQHQQRLQLRHFDNETAWQLGEKIKRQAEKQGVALAIDITVNHQTLFSYA CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECHHHHHHHH MAGTCAENQDWLRRKRNVVELLSTSSYAAGLMLQQRETSLDARYGVSLRDYAALGGAFPL HHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHCCCCHHHHHHHCCCCCE QIKQAGIIGSVNVSGAPHLDDHNLLLQVLADFVGLPTGSIELLTPLTPLSA EEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCC >Mature Secondary Structure MNLQQQLAYCQQHQQRLQLRHFDNETAWQLGEKIKRQAEKQGVALAIDITVNHQTLFSYA CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECHHHHHHHH MAGTCAENQDWLRRKRNVVELLSTSSYAAGLMLQQRETSLDARYGVSLRDYAALGGAFPL HHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHCCCCHHHHHHHCCCCCE QIKQAGIIGSVNVSGAPHLDDHNLLLQVLADFVGLPTGSIELLTPLTPLSA EEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA