| Definition | Yersinia pestis Nepal516, complete genome. |
|---|---|
| Accession | NC_008149 |
| Length | 4,534,590 |
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The map label for this gene is 108812261
Identifier: 108812261
GI number: 108812261
Start: 2377140
End: 2378078
Strand: Reverse
Name: 108812261
Synonym: YPN_2099
Alternate gene names: NA
Gene position: 2378078-2377140 (Counterclockwise)
Preceding gene: 108812262
Following gene: 108812260
Centisome position: 52.44
GC content: 46.22
Gene sequence:
>939_bases ATGACAACACTCAGTGAGCAAGCTCCTCCTCTACTGCAGGATACTCAGCTTGAACAGCAAATCTTGCGCCGCTCGATTTT TTATACCTTGATTATTGCAGTAATGGGGATCGTCTTCGGTATTGTATGTGGCTCAATGTCGATTATCTTTGATGGTATGT TCTCCGCCCTGGATGCGGGGATGTGCAGTTTATCTCTATTGGTATCTCGGCTACTTGGTCAACCGCATAGCCGACGTTTT CAATATGGTTTTTGGCATGTGGAACCGTTGGTTCTGGCCTTTAATGGCAGCTTATTAGCCCTCCTTTGTCTTTACGCTTT TGTGAATGCGATAAAAGGTATTTTTGATGGCGGGCGGGAATTGGAGCTCGGTTGGGCCATTGTCTACACATTGGCTGTCA GTATTTTTTGTTTCACCATTTATTTAAAACAGCGGCGCTTGAATAAACGGGTGAAATCCGAGCTTATTGCATTGGATACG AAGAGTTGGTTCATGTCCGCTTGTATCAGTACGGCGCTGTTAGTTGCATTTTTACTCTCATGGGGTATGGAAGGTACGCG CTATGAACACCTTATTGTTTATGCTGACCCCATGGTACTGGCGCTGTTAACGTTAGTATTAATTCCGGTCCCAATTAAAA CAGTGATTGCGGCAGTGCGTGAAGTTTTACAAATGACGCCCGATACACTGGATACGGCGATTGAGACCTTGATGGAACGC CTGGTGGATAAATATAAATTTGTTGATTACTCGCATTATGCCACCCGTGCTGGCCGTGGTTTATTTATCGAGATCCACGT GGTGATCCCGCCAGAAATGGATACCCGCGGGGTTCATCATTTCGATACTATCCGCGATGAGATCGCCCATGAGATTGGTG AGTCTGGGCCTCACCGCTGGTTAACCATCTCCTTTACGCGTGATGCCAAGTGGTTATAG
Upstream 100 bases:
>100_bases TTGGCATGTGATCTTATTAAATTGAGTTGATGTAATAATATTCCTAATATGAGAGTTTACTCATCAAGCTAAATTAAAAT CAAAAAAACAGGTTGTACAC
Downstream 100 bases:
>100_bases CTGGCCATAGCTGTTTGGTTTTTAGCCGTGCTTTTATCTTCCCCCAGCCGTGATTTGCTGGGGGTTTTTAATGGTTACCA AGGTGGATAAGTGAAAATAA
Product: membrane protein
Products: NA
Alternate protein names: Cation Efflux Protein; Co/Zn/Cd Cation Transporter; Cobalt-Zinc-Cadmium Resistance Protein; Cation Efflux System Component; Cation Efflux Family Protein; Cation Transporter; Cation Efflux Transporter Protein; Cation Transporter-Like Membrane Protein; Cation Efflux Transmembrane Protein; CDF Family Transporter; Cation Efflux Pump; Cation Efflux System Protein; Cobalt-Zinc-Cadmium Resistance Protein CzcD
Number of amino acids: Translated: 312; Mature: 311
Protein sequence:
>312_residues MTTLSEQAPPLLQDTQLEQQILRRSIFYTLIIAVMGIVFGIVCGSMSIIFDGMFSALDAGMCSLSLLVSRLLGQPHSRRF QYGFWHVEPLVLAFNGSLLALLCLYAFVNAIKGIFDGGRELELGWAIVYTLAVSIFCFTIYLKQRRLNKRVKSELIALDT KSWFMSACISTALLVAFLLSWGMEGTRYEHLIVYADPMVLALLTLVLIPVPIKTVIAAVREVLQMTPDTLDTAIETLMER LVDKYKFVDYSHYATRAGRGLFIEIHVVIPPEMDTRGVHHFDTIRDEIAHEIGESGPHRWLTISFTRDAKWL
Sequences:
>Translated_312_residues MTTLSEQAPPLLQDTQLEQQILRRSIFYTLIIAVMGIVFGIVCGSMSIIFDGMFSALDAGMCSLSLLVSRLLGQPHSRRF QYGFWHVEPLVLAFNGSLLALLCLYAFVNAIKGIFDGGRELELGWAIVYTLAVSIFCFTIYLKQRRLNKRVKSELIALDT KSWFMSACISTALLVAFLLSWGMEGTRYEHLIVYADPMVLALLTLVLIPVPIKTVIAAVREVLQMTPDTLDTAIETLMER LVDKYKFVDYSHYATRAGRGLFIEIHVVIPPEMDTRGVHHFDTIRDEIAHEIGESGPHRWLTISFTRDAKWL >Mature_311_residues TTLSEQAPPLLQDTQLEQQILRRSIFYTLIIAVMGIVFGIVCGSMSIIFDGMFSALDAGMCSLSLLVSRLLGQPHSRRFQ YGFWHVEPLVLAFNGSLLALLCLYAFVNAIKGIFDGGRELELGWAIVYTLAVSIFCFTIYLKQRRLNKRVKSELIALDTK SWFMSACISTALLVAFLLSWGMEGTRYEHLIVYADPMVLALLTLVLIPVPIKTVIAAVREVLQMTPDTLDTAIETLMERL VDKYKFVDYSHYATRAGRGLFIEIHVVIPPEMDTRGVHHFDTIRDEIAHEIGESGPHRWLTISFTRDAKWL
Specific function: Unknown
COG id: COG3965
COG function: function code P; Predicted Co/Zn/Cd cation transporters
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35265; Mature: 35134
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTLSEQAPPLLQDTQLEQQILRRSIFYTLIIAVMGIVFGIVCGSMSIIFDGMFSALDAG CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MCSLSLLVSRLLGQPHSRRFQYGFWHVEPLVLAFNGSLLALLCLYAFVNAIKGIFDGGRE HHHHHHHHHHHHCCCCCCCEECCEEEHHHEEEEECCHHHHHHHHHHHHHHHHHHHCCCCE LELGWAIVYTLAVSIFCFTIYLKQRRLNKRVKSELIALDTKSWFMSACISTALLVAFLLS EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH WGMEGTRYEHLIVYADPMVLALLTLVLIPVPIKTVIAAVREVLQMTPDTLDTAIETLMER CCCCCCCEEEEEEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH LVDKYKFVDYSHYATRAGRGLFIEIHVVIPPEMDTRGVHHFDTIRDEIAHEIGESGPHRW HHHHHHHCCHHHHHHHCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE LTISFTRDAKWL EEEEECCCCCCC >Mature Secondary Structure TTLSEQAPPLLQDTQLEQQILRRSIFYTLIIAVMGIVFGIVCGSMSIIFDGMFSALDAG CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MCSLSLLVSRLLGQPHSRRFQYGFWHVEPLVLAFNGSLLALLCLYAFVNAIKGIFDGGRE HHHHHHHHHHHHCCCCCCCEECCEEEHHHEEEEECCHHHHHHHHHHHHHHHHHHHCCCCE LELGWAIVYTLAVSIFCFTIYLKQRRLNKRVKSELIALDTKSWFMSACISTALLVAFLLS EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH WGMEGTRYEHLIVYADPMVLALLTLVLIPVPIKTVIAAVREVLQMTPDTLDTAIETLMER CCCCCCCEEEEEEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH LVDKYKFVDYSHYATRAGRGLFIEIHVVIPPEMDTRGVHHFDTIRDEIAHEIGESGPHRW HHHHHHHCCHHHHHHHCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE LTISFTRDAKWL EEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA