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The map label for this gene is ompX [H]

Identifier: 108812262

GI number: 108812262

Start: 2378394

End: 2378918

Strand: Reverse

Name: ompX [H]

Synonym: YPN_2100

Alternate gene names: 108812262

Gene position: 2378918-2378394 (Counterclockwise)

Preceding gene: 108812263

Following gene: 108812261

Centisome position: 52.46

GC content: 48.38

Gene sequence:

>525_bases
ATGAAAAAAATTGCATGTCTTTCAGCGGTAGCAGCGTGTGTGTTAGCCGTGACCGCAGGTTCTGCCTTTGCAGGTCAAAG
CACCGTTTCTGGTGGTTATGCCCAGAGCGATTATCAAGGTGTTGCGAACAAGTCTTCAGGTTTTAACCTGAAATACCGTT
ATGAGTGGAGTGACTCTCAACTGGGTTACATCACCTCTTTCACTCACACTGAAAAAAGCGGTTTCGGTGACGAAGCGGTT
TACAACAAAGCGCAATATAATGCGATTACCGGTGGTCCAGCATACCGCATCAATGATTGGGCTAGCATTTATGGTCTGGT
CGGTGTGGGTCATGGTCGTTTCACCCAAAACGAGTCAGCATTCGTTGGTGATAAACACAGCACCAGTGACTACGGCTTCA
CCTACGGTGCTGGCTTGCAGTTCAACCCAGCCGAAAACGTTGCTCTGGATGTTTCTTACGAGCAGAGCCGTATCCGTAAC
GTTGACGTAGGTACTTGGGTTGCTGGCGTAGGTTACACTTTCTAA

Upstream 100 bases:

>100_bases
TAATTAGACAATTAATATATAACAGAGTTTCATCCTGTTTATTGCTATAGTCGCACGGTGTTTTTGTGTCACTCAATAAT
TTGCGTCTTTCGAGGTGGTT

Downstream 100 bases:

>100_bases
GTGATAGCCTGAGCTATTGAGTATTGGCCTTCAACGGTGAAATACTGTGTCTGATAAAAGTCCGCTTTCGAGCGGATTTT
TTTTGCCTGCTATTTTTATC

Product: outer membrane protein X

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MKKIACLSAVAACVLAVTAGSAFAGQSTVSGGYAQSDYQGVANKSSGFNLKYRYEWSDSQLGYITSFTHTEKSGFGDEAV
YNKAQYNAITGGPAYRINDWASIYGLVGVGHGRFTQNESAFVGDKHSTSDYGFTYGAGLQFNPAENVALDVSYEQSRIRN
VDVGTWVAGVGYTF

Sequences:

>Translated_174_residues
MKKIACLSAVAACVLAVTAGSAFAGQSTVSGGYAQSDYQGVANKSSGFNLKYRYEWSDSQLGYITSFTHTEKSGFGDEAV
YNKAQYNAITGGPAYRINDWASIYGLVGVGHGRFTQNESAFVGDKHSTSDYGFTYGAGLQFNPAENVALDVSYEQSRIRN
VDVGTWVAGVGYTF
>Mature_174_residues
MKKIACLSAVAACVLAVTAGSAFAGQSTVSGGYAQSDYQGVANKSSGFNLKYRYEWSDSQLGYITSFTHTEKSGFGDEAV
YNKAQYNAITGGPAYRINDWASIYGLVGVGHGRFTQNESAFVGDKHSTSDYGFTYGAGLQFNPAENVALDVSYEQSRIRN
VDVGTWVAGVGYTF

Specific function: Unknown

COG id: COG3637

COG function: function code M; Opacity protein and related surface antigens

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ail/ompX/pagC/lom family [H]

Homologues:

Organism=Escherichia coli, GI1787034, Length=174, Percent_Identity=70.6896551724138, Blast_Score=235, Evalue=1e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000758
- InterPro:   IPR011250 [H]

Pfam domain/function: PF06316 Ail_Lom [H]

EC number: NA

Molecular weight: Translated: 18619; Mature: 18619

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS00694 ENT_VIR_OMP_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIACLSAVAACVLAVTAGSAFAGQSTVSGGYAQSDYQGVANKSSGFNLKYRYEWSDSQ
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC
LGYITSFTHTEKSGFGDEAVYNKAQYNAITGGPAYRINDWASIYGLVGVGHGRFTQNESA
CEEEEEECCCCCCCCCCHHHHCCHHCCEECCCCCEEECCHHHEEEEEECCCCCCCCCCCC
FVGDKHSTSDYGFTYGAGLQFNPAENVALDVSYEQSRIRNVDVGTWVAGVGYTF
EECCCCCCCCCCEEECCCEEECCCCCEEEEEEECHHHCCCCCCCCEEECCCCCC
>Mature Secondary Structure
MKKIACLSAVAACVLAVTAGSAFAGQSTVSGGYAQSDYQGVANKSSGFNLKYRYEWSDSQ
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC
LGYITSFTHTEKSGFGDEAVYNKAQYNAITGGPAYRINDWASIYGLVGVGHGRFTQNESA
CEEEEEECCCCCCCCCCHHHHCCHHCCEECCCCCEEECCHHHEEEEEECCCCCCCCCCCC
FVGDKHSTSDYGFTYGAGLQFNPAENVALDVSYEQSRIRNVDVGTWVAGVGYTF
EECCCCCCCCCCEEECCCEEECCCCCEEEEEEECHHHCCCCCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]