| Definition | Yersinia pestis Nepal516, complete genome. |
|---|---|
| Accession | NC_008149 |
| Length | 4,534,590 |
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The map label for this gene is 108812260
Identifier: 108812260
GI number: 108812260
Start: 2376360
End: 2376902
Strand: Reverse
Name: 108812260
Synonym: YPN_2098
Alternate gene names: NA
Gene position: 2376902-2376360 (Counterclockwise)
Preceding gene: 108812261
Following gene: 108812259
Centisome position: 52.42
GC content: 38.86
Gene sequence:
>543_bases ATGCCAGGTCGTATTCAAGAAATGCCTCAATCATGGCTTACCGCTAGCCGGCCCGTTACAGAAATTGTAAAGCAACCATC AACGGGTTTGGTAAAAGACAGTAGTCTTAATAAAGATATAAAAACTGAAGAGACAGAACAATTTCTGGAGGAAATAGACG CCCAGATGAAAGTTATTTGCGCCTGGGAAATGGACAGTACCACTGTGGACCAATGTATTAAAGAGTTATGCGATAAAATA GGGGCATTGTATAACGATGTATTAACTACTCGAAGCCAGGTCTATGAAATGGTTTTAAATTACGGGACAGAAAGTGGTCA AATGGTGCGCTTAAGAGAAGGATGTAACGCAGCCGATAGAGACCGCTATTTAGAAAAATTGATCGCTTACAATCATATTC GTCAGGCTGTTAGTGATAAAGTCGCGAAGATAGAAAAACATACGGACTCAGTAAAACGAATGGTTGATTTACATCATTAT GATTATATTTGTGGTGACTTAAAGGCACTAAATAAAAATGGTGACGTACCTAAACAGTCATGA
Upstream 100 bases:
>100_bases ATAAAAGAATATCCCCTAAAAATAATTAATACTCCTTATCAACATTGAGCGTCCTTATTTTTCACCCAATAAGGGCTTAA CCACCACAAGGAGTTATTCT
Downstream 100 bases:
>100_bases TTCAGATTAGATAATTTACTTATCGTAAATAACTAGACTTTATCTTTAACATATACACTATGTTGACGGGTTATTTCTTT CGTAATCATATTGAAATAGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 180; Mature: 179
Protein sequence:
>180_residues MPGRIQEMPQSWLTASRPVTEIVKQPSTGLVKDSSLNKDIKTEETEQFLEEIDAQMKVICAWEMDSTTVDQCIKELCDKI GALYNDVLTTRSQVYEMVLNYGTESGQMVRLREGCNAADRDRYLEKLIAYNHIRQAVSDKVAKIEKHTDSVKRMVDLHHY DYICGDLKALNKNGDVPKQS
Sequences:
>Translated_180_residues MPGRIQEMPQSWLTASRPVTEIVKQPSTGLVKDSSLNKDIKTEETEQFLEEIDAQMKVICAWEMDSTTVDQCIKELCDKI GALYNDVLTTRSQVYEMVLNYGTESGQMVRLREGCNAADRDRYLEKLIAYNHIRQAVSDKVAKIEKHTDSVKRMVDLHHY DYICGDLKALNKNGDVPKQS >Mature_179_residues PGRIQEMPQSWLTASRPVTEIVKQPSTGLVKDSSLNKDIKTEETEQFLEEIDAQMKVICAWEMDSTTVDQCIKELCDKIG ALYNDVLTTRSQVYEMVLNYGTESGQMVRLREGCNAADRDRYLEKLIAYNHIRQAVSDKVAKIEKHTDSVKRMVDLHHYD YICGDLKALNKNGDVPKQS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20545; Mature: 20413
Theoretical pI: Translated: 5.35; Mature: 5.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 6.7 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPGRIQEMPQSWLTASRPVTEIVKQPSTGLVKDSSLNKDIKTEETEQFLEEIDAQMKVIC CCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHE AWEMDSTTVDQCIKELCDKIGALYNDVLTTRSQVYEMVLNYGTESGQMVRLREGCNAADR EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHCCCCCHH DRYLEKLIAYNHIRQAVSDKVAKIEKHTDSVKRMVDLHHYDYICGDLKALNKNGDVPKQS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure PGRIQEMPQSWLTASRPVTEIVKQPSTGLVKDSSLNKDIKTEETEQFLEEIDAQMKVIC CCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHE AWEMDSTTVDQCIKELCDKIGALYNDVLTTRSQVYEMVLNYGTESGQMVRLREGCNAADR EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHCCCCCHH DRYLEKLIAYNHIRQAVSDKVAKIEKHTDSVKRMVDLHHYDYICGDLKALNKNGDVPKQS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA