| Definition | Yersinia pestis Nepal516, complete genome. |
|---|---|
| Accession | NC_008149 |
| Length | 4,534,590 |
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The map label for this gene is 108812259
Identifier: 108812259
GI number: 108812259
Start: 2375496
End: 2376218
Strand: Reverse
Name: 108812259
Synonym: YPN_2097
Alternate gene names: NA
Gene position: 2376218-2375496 (Counterclockwise)
Preceding gene: 108812260
Following gene: 108812258
Centisome position: 52.4
GC content: 32.23
Gene sequence:
>723_bases GTGTTTCTATTTTTCATATCTCTATATCTAATTAATTTTACTAAAGGTTTATTTATGTTGTCAGGTATTCAATCGGCATC ACTAATATGTCATTCGTCTTCAATAGAAGAAAGTGAAAAAATTCAATCAGTTGTTTTTTTATCTGATATCGGTCTTGATA AAAACAGGTTAACACTAGAGCAAGAAAAGGGATTGAAGGATATAAAATCATCTATAGATGATTGTTATCACAACGGTATT AGTACTAGTACTGGCAGGAAAAAAATAAAAGAATTAAGAAATAAAGTTACCCAGTACATTAACTCTGTAGAGAGTTACCG GGATAAGATTTATGATGTTATCATTGATAAAAGAACGGGCAGAGGTGAAAAGATAATATTAAAATCTGGATGTGATGAAA CACATAGAAATAGTTATCTTAAGGGGATTATTTATCTCAGTAAATTGCAGGATCTTATTCGTAATGAAATAGATAATGCA CCTATTAAATATAAAAAATCACTAAGTAAAGTTTTTGATGTCATGGGAAAAGGCGCTGTGTATGGCGACATAAAGGCACT GAATGAAGATCGTAAATTGCCTGATTTTAAATATAGTGACTCTGAATGTTCTGCGTATGATTATAGCTATGGTAACCATG CACTTGAATGTGGTATTCGCTCTTTGGAATGCGCAGGACAGACTGGATTACTGATCTGTATGTGTCTAATGGGAGGGAAA TGA
Upstream 100 bases:
>100_bases ATCTTTAACATATACACTATGTTGACGGGTTATTTCTTTCGTAATCATATTGAAATAGCCCATATTTTAAACGGAAAAAT TAGTATCCTATCAGTATTGA
Downstream 100 bases:
>100_bases AAATATAAGTTGTCATATAAAAGTATAAAGTACAGATTTGGTGCTATGGTTCCTAATTTTAATTATTTAAATAGATAAAC CTGTTGAGGGGATCTGTGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 240; Mature: 240
Protein sequence:
>240_residues MFLFFISLYLINFTKGLFMLSGIQSASLICHSSSIEESEKIQSVVFLSDIGLDKNRLTLEQEKGLKDIKSSIDDCYHNGI STSTGRKKIKELRNKVTQYINSVESYRDKIYDVIIDKRTGRGEKIILKSGCDETHRNSYLKGIIYLSKLQDLIRNEIDNA PIKYKKSLSKVFDVMGKGAVYGDIKALNEDRKLPDFKYSDSECSAYDYSYGNHALECGIRSLECAGQTGLLICMCLMGGK
Sequences:
>Translated_240_residues MFLFFISLYLINFTKGLFMLSGIQSASLICHSSSIEESEKIQSVVFLSDIGLDKNRLTLEQEKGLKDIKSSIDDCYHNGI STSTGRKKIKELRNKVTQYINSVESYRDKIYDVIIDKRTGRGEKIILKSGCDETHRNSYLKGIIYLSKLQDLIRNEIDNA PIKYKKSLSKVFDVMGKGAVYGDIKALNEDRKLPDFKYSDSECSAYDYSYGNHALECGIRSLECAGQTGLLICMCLMGGK >Mature_240_residues MFLFFISLYLINFTKGLFMLSGIQSASLICHSSSIEESEKIQSVVFLSDIGLDKNRLTLEQEKGLKDIKSSIDDCYHNGI STSTGRKKIKELRNKVTQYINSVESYRDKIYDVIIDKRTGRGEKIILKSGCDETHRNSYLKGIIYLSKLQDLIRNEIDNA PIKYKKSLSKVFDVMGKGAVYGDIKALNEDRKLPDFKYSDSECSAYDYSYGNHALECGIRSLECAGQTGLLICMCLMGGK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27087; Mature: 27087
Theoretical pI: Translated: 8.36; Mature: 8.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 3.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFLFFISLYLINFTKGLFMLSGIQSASLICHSSSIEESEKIQSVVFLSDIGLDKNRLTLE CHHHHHHHHHHHHHHHHHHHHCCCHHHHEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHH QEKGLKDIKSSIDDCYHNGISTSTGRKKIKELRNKVTQYINSVESYRDKIYDVIIDKRTG HHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC RGEKIILKSGCDETHRNSYLKGIIYLSKLQDLIRNEIDNAPIKYKKSLSKVFDVMGKGAV CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCE YGDIKALNEDRKLPDFKYSDSECSAYDYSYGNHALECGIRSLECAGQTGLLICMCLMGGK EHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHCCCCHHHHHHHHHHCCC >Mature Secondary Structure MFLFFISLYLINFTKGLFMLSGIQSASLICHSSSIEESEKIQSVVFLSDIGLDKNRLTLE CHHHHHHHHHHHHHHHHHHHHCCCHHHHEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHH QEKGLKDIKSSIDDCYHNGISTSTGRKKIKELRNKVTQYINSVESYRDKIYDVIIDKRTG HHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC RGEKIILKSGCDETHRNSYLKGIIYLSKLQDLIRNEIDNAPIKYKKSLSKVFDVMGKGAV CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCE YGDIKALNEDRKLPDFKYSDSECSAYDYSYGNHALECGIRSLECAGQTGLLICMCLMGGK EHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHCCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA