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The map label for this gene is ycfM [H]

Identifier: 108812178

GI number: 108812178

Start: 2280249

End: 2280824

Strand: Reverse

Name: ycfM [H]

Synonym: YPN_2016

Alternate gene names: 108812178

Gene position: 2280824-2280249 (Counterclockwise)

Preceding gene: 108812179

Following gene: 108812177

Centisome position: 50.3

GC content: 51.39

Gene sequence:

>576_bases
ATGAAAAGGTATTTATCTCTGGCGCTGGCCGCACTGGTGCTGACGGGTTGCGTTCCTCCGGATTCTGTCACGCCGACGCC
TCCAGTGACCATTGAACCGGTAACGCCACCGGATGTTGAGGTGCCACCGCCGGTAGATACCGTTCCGCAGCCACCGAAAG
TGCAGTCAATTGACTGGGCTGTCAGTGTTGAACCTCTGGTTGCCCAAATGGTGAACAGCGATGAGGTAGCGACAGGTAGC
ATACTGTTGGTGGATTCGGTTAAAAATAATACTAATGGCGCATTGCAAACAGCGAAAGCGACTGCTGCGTTGCATCAAGT
CCTGTCATCAAATAAAAAGTTTGTGCTGATCTCACCCCAGCAACTGGGCGTCGCTAAACAGACGCTGGGGTTATCTGAGG
AGGATAGCTTTGGCTCGCGCAGTAAAGCGATCGGTTTGGCCCGTTACGTCGGTGCGCAATATGTGCTGTACAGTGATGTC
AGTGGCGATGTGAAATCTCCGACCATTGAAATGCAATTGATGCAGACACAAACCGGTGAAATCATTTGGTCTGGTAATGC
GCCTGTCCAATATTGA

Upstream 100 bases:

>100_bases
ATTCAGTCAATTAACAATAATTTTAATGCGCGCAGTGCGCGTCTCTATTTATTTTTATAACGGATTGGTTTTTTTATGAT
CACGTTATTGGAGTGGAACA

Downstream 100 bases:

>100_bases
TTCTTCTCTGTCTGCCTTAATAGCAAACATCAATCCGGCGGTGAAAACCGCCGATTGTCATATTAGCCCGGTATCAGGAT
TAACCGGTGAAAGTTGGCGT

Product: putative lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MKRYLSLALAALVLTGCVPPDSVTPTPPVTIEPVTPPDVEVPPPVDTVPQPPKVQSIDWAVSVEPLVAQMVNSDEVATGS
ILLVDSVKNNTNGALQTAKATAALHQVLSSNKKFVLISPQQLGVAKQTLGLSEEDSFGSRSKAIGLARYVGAQYVLYSDV
SGDVKSPTIEMQLMQTQTGEIIWSGNAPVQY

Sequences:

>Translated_191_residues
MKRYLSLALAALVLTGCVPPDSVTPTPPVTIEPVTPPDVEVPPPVDTVPQPPKVQSIDWAVSVEPLVAQMVNSDEVATGS
ILLVDSVKNNTNGALQTAKATAALHQVLSSNKKFVLISPQQLGVAKQTLGLSEEDSFGSRSKAIGLARYVGAQYVLYSDV
SGDVKSPTIEMQLMQTQTGEIIWSGNAPVQY
>Mature_191_residues
MKRYLSLALAALVLTGCVPPDSVTPTPPVTIEPVTPPDVEVPPPVDTVPQPPKVQSIDWAVSVEPLVAQMVNSDEVATGS
ILLVDSVKNNTNGALQTAKATAALHQVLSSNKKFVLISPQQLGVAKQTLGLSEEDSFGSRSKAIGLARYVGAQYVLYSDV
SGDVKSPTIEMQLMQTQTGEIIWSGNAPVQY

Specific function: Unknown

COG id: COG3417

COG function: function code R; Collagen-binding surface adhesin SpaP (antigen I/II family)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787348, Length=207, Percent_Identity=48.3091787439614, Blast_Score=184, Evalue=3e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014094 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20223; Mature: 20223

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRYLSLALAALVLTGCVPPDSVTPTPPVTIEPVTPPDVEVPPPVDTVPQPPKVQSIDWA
CHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEE
VSVEPLVAQMVNSDEVATGSILLVDSVKNNTNGALQTAKATAALHQVLSSNKKFVLISPQ
EEHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCH
QLGVAKQTLGLSEEDSFGSRSKAIGLARYVGAQYVLYSDVSGDVKSPTIEMQLMQTQTGE
HHCHHHHHCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCEEEEEEEECCCCC
IIWSGNAPVQY
EEECCCCCCCC
>Mature Secondary Structure
MKRYLSLALAALVLTGCVPPDSVTPTPPVTIEPVTPPDVEVPPPVDTVPQPPKVQSIDWA
CHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEE
VSVEPLVAQMVNSDEVATGSILLVDSVKNNTNGALQTAKATAALHQVLSSNKKFVLISPQ
EEHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCH
QLGVAKQTLGLSEEDSFGSRSKAIGLARYVGAQYVLYSDVSGDVKSPTIEMQLMQTQTGE
HHCHHHHHCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCEEEEEEEECCCCC
IIWSGNAPVQY
EEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]