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The map label for this gene is csiE [H]

Identifier: 108811398

GI number: 108811398

Start: 1404232

End: 1405608

Strand: Reverse

Name: csiE [H]

Synonym: YPN_1235

Alternate gene names: 108811398

Gene position: 1405608-1404232 (Counterclockwise)

Preceding gene: 108811401

Following gene: 108811394

Centisome position: 31.0

GC content: 46.84

Gene sequence:

>1377_bases
ATGCGCCTAAACACGCCCTTTAAGCCTCGGTTATCTGATGATCAACCGCTATCTGGTCAACAACGCCGCTGCCATATGTT
GCTGATGTTATTTATGCCAGCACGCAAGGTACAGTTAGACACCATTAGCCAATTTAACGGGGTCGATCTTGCGACTACCC
GGCAAGATATAGCCGAGGTTGCTAGCGAAATCCAGCGTTTCTACCATTTGGAACTTAATGCCAGTGCCGACGATTATTAT
CAGATTAATGGGAGCCGACTCGATAAACGACTCTGTTTGATCCATTGGCTACGTCGTGGGCTGCGTTATTGTCCACATTT
TATTGAACACTATTTTTCCCCCGACTTATATCAAGCACTGGCGTGGAATAATGGCCTGCTGTCGTCGGCTCTGCGACGAT
CAACTCTACGACAATCAACTTTGCGACAATCAACTTTGCGACAATCAACTTTGCGGCAATCAATTCTACGGCAATCAACT
TTGCGACAAATCGTTTACCAGTGTGAGCCCCACCTAAACCGCCAACTCAGTGAAAAAGATCGTCAGTTTTTGCAACTGTA
TTTGGCGTATTGTGTCTGGGAAAACCAACAGCACACCGTGCCACAATTATCCATGACCCAACAGCAATGGTTAGAACAAA
AACCTGCGCGGGTTGCCGCTGATCATTTATTCAATGCACTCAACCGGTTATTGATCCCTCCGCTGGGTTTAATTGAGCGC
GATATGCTGATCCTGATGTTGACAATGATCAAAGCACACCACTACCACAGCACCCAATCACCGGAAGATGCCCGCCTGAT
AGCGGCTATCAAGCAATTAATTCACCGTTTTAAGCGACTGTCCGGCATGCATTTTAGTTGTGATGACTCGCTGGTCAGCC
AGCTATTCGCGCATCTCGCCCCCGCCATTGAGCGTTGCTATTTTAATATTGGGATCGACCATTCACTCCCCAAAGATATC
AGTAAGATGTATCCCCGTTTGCTCCGTACCACACAGCAGGCGCTGATCAAGTTTGAGCAGGAGTACCAGATTCGCTTTTC
TATTGAAGAAGTGATTTTGATCGCCATCAGCTTCGGTGCCTGGTTAATACAGGGGAATGCATTACAGGAGAAGCAGATTT
TATTATTGACGCACGATAACCCAATATTGGAAGCCCAAGTCGAGCAGCAAATTCGTGAACTGACCTTACTACCGCTACAT
ATTAAATATTTATCTCATGATGTTTATCTGCAATCAGGGGCCCCCGCGGGCACTGCGGTGGTACTTACCCCCTATGTTTT
GCAATCAACTGAATCAGCGCCGCCGCTGATTCAGATATCATTTCCGTTAACTGAGCCGCAAAGTATTCAGTTATGCCGCA
TATTGGAACTGCCTTAG

Upstream 100 bases:

>100_bases
TGTAAGTCGATGTAAAAAACTACTGGCCCGGTAAACCGAATGAATCTCTTTTGCTATGCTTAAATCCGATAAATAACGAT
GATTCATCAAAGATATTTAT

Downstream 100 bases:

>100_bases
CTGGCTAATTCATTTGGGTTCGCGGCCACTCGTGGCCGGATAAACAGCGCCGGAATAACAATGAGCGCCATAACCCAAAA
GACCCCACTCTGATAATTCT

Product: stationary phase inducible protein CsiE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 458; Mature: 458

Protein sequence:

>458_residues
MRLNTPFKPRLSDDQPLSGQQRRCHMLLMLFMPARKVQLDTISQFNGVDLATTRQDIAEVASEIQRFYHLELNASADDYY
QINGSRLDKRLCLIHWLRRGLRYCPHFIEHYFSPDLYQALAWNNGLLSSALRRSTLRQSTLRQSTLRQSTLRQSILRQST
LRQIVYQCEPHLNRQLSEKDRQFLQLYLAYCVWENQQHTVPQLSMTQQQWLEQKPARVAADHLFNALNRLLIPPLGLIER
DMLILMLTMIKAHHYHSTQSPEDARLIAAIKQLIHRFKRLSGMHFSCDDSLVSQLFAHLAPAIERCYFNIGIDHSLPKDI
SKMYPRLLRTTQQALIKFEQEYQIRFSIEEVILIAISFGAWLIQGNALQEKQILLLTHDNPILEAQVEQQIRELTLLPLH
IKYLSHDVYLQSGAPAGTAVVLTPYVLQSTESAPPLIQISFPLTEPQSIQLCRILELP

Sequences:

>Translated_458_residues
MRLNTPFKPRLSDDQPLSGQQRRCHMLLMLFMPARKVQLDTISQFNGVDLATTRQDIAEVASEIQRFYHLELNASADDYY
QINGSRLDKRLCLIHWLRRGLRYCPHFIEHYFSPDLYQALAWNNGLLSSALRRSTLRQSTLRQSTLRQSTLRQSILRQST
LRQIVYQCEPHLNRQLSEKDRQFLQLYLAYCVWENQQHTVPQLSMTQQQWLEQKPARVAADHLFNALNRLLIPPLGLIER
DMLILMLTMIKAHHYHSTQSPEDARLIAAIKQLIHRFKRLSGMHFSCDDSLVSQLFAHLAPAIERCYFNIGIDHSLPKDI
SKMYPRLLRTTQQALIKFEQEYQIRFSIEEVILIAISFGAWLIQGNALQEKQILLLTHDNPILEAQVEQQIRELTLLPLH
IKYLSHDVYLQSGAPAGTAVVLTPYVLQSTESAPPLIQISFPLTEPQSIQLCRILELP
>Mature_458_residues
MRLNTPFKPRLSDDQPLSGQQRRCHMLLMLFMPARKVQLDTISQFNGVDLATTRQDIAEVASEIQRFYHLELNASADDYY
QINGSRLDKRLCLIHWLRRGLRYCPHFIEHYFSPDLYQALAWNNGLLSSALRRSTLRQSTLRQSTLRQSTLRQSILRQST
LRQIVYQCEPHLNRQLSEKDRQFLQLYLAYCVWENQQHTVPQLSMTQQQWLEQKPARVAADHLFNALNRLLIPPLGLIER
DMLILMLTMIKAHHYHSTQSPEDARLIAAIKQLIHRFKRLSGMHFSCDDSLVSQLFAHLAPAIERCYFNIGIDHSLPKDI
SKMYPRLLRTTQQALIKFEQEYQIRFSIEEVILIAISFGAWLIQGNALQEKQILLLTHDNPILEAQVEQQIRELTLLPLH
IKYLSHDVYLQSGAPAGTAVVLTPYVLQSTESAPPLIQISFPLTEPQSIQLCRILELP

Specific function: Unknown

COG id: COG3711

COG function: function code K; Transcriptional antiterminator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PRD domains [H]

Homologues:

Organism=Escherichia coli, GI87082124, Length=448, Percent_Identity=37.0535714285714, Blast_Score=283, Evalue=1e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011608 [H]

Pfam domain/function: PF00874 PRD [H]

EC number: NA

Molecular weight: Translated: 53173; Mature: 53173

Theoretical pI: Translated: 8.69; Mature: 8.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLNTPFKPRLSDDQPLSGQQRRCHMLLMLFMPARKVQLDTISQFNGVDLATTRQDIAEV
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEHHHHHHCCCCCCHHHHHHHHHH
ASEIQRFYHLELNASADDYYQINGSRLDKRLCLIHWLRRGLRYCPHFIEHYFSPDLYQAL
HHHHHHHEEEEECCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
AWNNGLLSSALRRSTLRQSTLRQSTLRQSTLRQSILRQSTLRQIVYQCEPHLNRQLSEKD
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
RQFLQLYLAYCVWENQQHTVPQLSMTQQQWLEQKPARVAADHLFNALNRLLIPPLGLIER
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHH
DMLILMLTMIKAHHYHSTQSPEDARLIAAIKQLIHRFKRLSGMHFSCDDSLVSQLFAHLA
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
PAIERCYFNIGIDHSLPKDISKMYPRLLRTTQQALIKFEQEYQIRFSIEEVILIAISFGA
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHH
WLIQGNALQEKQILLLTHDNPILEAQVEQQIRELTLLPLHIKYLSHDVYLQSGAPAGTAV
HEEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCEE
VLTPYVLQSTESAPPLIQISFPLTEPQSIQLCRILELP
EECHHHHHCCCCCCCEEEEECCCCCCCCCCHHHEECCC
>Mature Secondary Structure
MRLNTPFKPRLSDDQPLSGQQRRCHMLLMLFMPARKVQLDTISQFNGVDLATTRQDIAEV
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEHHHHHHCCCCCCHHHHHHHHHH
ASEIQRFYHLELNASADDYYQINGSRLDKRLCLIHWLRRGLRYCPHFIEHYFSPDLYQAL
HHHHHHHEEEEECCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
AWNNGLLSSALRRSTLRQSTLRQSTLRQSTLRQSILRQSTLRQIVYQCEPHLNRQLSEKD
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
RQFLQLYLAYCVWENQQHTVPQLSMTQQQWLEQKPARVAADHLFNALNRLLIPPLGLIER
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHH
DMLILMLTMIKAHHYHSTQSPEDARLIAAIKQLIHRFKRLSGMHFSCDDSLVSQLFAHLA
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
PAIERCYFNIGIDHSLPKDISKMYPRLLRTTQQALIKFEQEYQIRFSIEEVILIAISFGA
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHH
WLIQGNALQEKQILLLTHDNPILEAQVEQQIRELTLLPLHIKYLSHDVYLQSGAPAGTAV
HEEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCEE
VLTPYVLQSTESAPPLIQISFPLTEPQSIQLCRILELP
EECHHHHHCCCCCCCEEEEECCCCCCCCCCHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]