Definition | Yersinia pestis Nepal516, complete genome. |
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Accession | NC_008149 |
Length | 4,534,590 |
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The map label for this gene is 108811236
Identifier: 108811236
GI number: 108811236
Start: 1236545
End: 1236847
Strand: Reverse
Name: 108811236
Synonym: YPN_1072
Alternate gene names: NA
Gene position: 1236847-1236545 (Counterclockwise)
Preceding gene: 108811238
Following gene: 108811224
Centisome position: 27.28
GC content: 44.55
Gene sequence:
>303_bases GTGCAATCTCCGAGTAATAATAGCCGCGCACATTGCAGCAAACCCTTTTTATATCGCCAAAATCAGTGGCATTTTAACCA GGCAATAAGTGAATATCGCCTTCCTGCTCCGTTAAGTGCGCAGGATTTAACCGATAGCGTCAATCACATCAACATGAGCG TGATAAAGGACAACGCGATCAGAGCCAGTGGGACAGCGAAAATAATGATGAACCACCGCTTACGAAGAACAGCCGCCACG ATTAAACCTACGCACATCGCAGCGACAACAGGCCAATATATCATTGAAAAAACAATGATATAA
Upstream 100 bases:
>100_bases AGGAAGCAAAAATTTGAGTATGCGGGAACGGTCCATATTTATCTGTTTTTCATCTCTGGCAAAGCAACAACATTCATGCC TTATATTCTGACAGCTATCC
Downstream 100 bases:
>100_bases AAAATCCATGATCCTAATTCTGTGGGATTAAATGAAAAATCCATGTTAACCTCAGTTATTCCATTATATTAAAAACTAAA TTTTACAGTATAAATTTATT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 100; Mature: 100
Protein sequence:
>100_residues MQSPSNNSRAHCSKPFLYRQNQWHFNQAISEYRLPAPLSAQDLTDSVNHINMSVIKDNAIRASGTAKIMMNHRLRRTAAT IKPTHIAATTGQYIIEKTMI
Sequences:
>Translated_100_residues MQSPSNNSRAHCSKPFLYRQNQWHFNQAISEYRLPAPLSAQDLTDSVNHINMSVIKDNAIRASGTAKIMMNHRLRRTAAT IKPTHIAATTGQYIIEKTMI >Mature_100_residues MQSPSNNSRAHCSKPFLYRQNQWHFNQAISEYRLPAPLSAQDLTDSVNHINMSVIKDNAIRASGTAKIMMNHRLRRTAAT IKPTHIAATTGQYIIEKTMI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 11322; Mature: 11322
Theoretical pI: Translated: 10.77; Mature: 10.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 5.0 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 5.0 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQSPSNNSRAHCSKPFLYRQNQWHFNQAISEYRLPAPLSAQDLTDSVNHINMSVIKDNAI CCCCCCCCCCCCCCCEEECCCCCCHHHHHHHCCCCCCCCHHHHHCCHHHEEEEEEECCCE RASGTAKIMMNHRLRRTAATIKPTHIAATTGQYIIEKTMI ECCCCEEEEEHHHHHHHHCCCCCCEEEECCCCCCEEECCC >Mature Secondary Structure MQSPSNNSRAHCSKPFLYRQNQWHFNQAISEYRLPAPLSAQDLTDSVNHINMSVIKDNAI CCCCCCCCCCCCCCCEEECCCCCCHHHHHHHCCCCCCCCHHHHHCCHHHEEEEEEECCCE RASGTAKIMMNHRLRRTAATIKPTHIAATTGQYIIEKTMI ECCCCEEEEEHHHHHHHHCCCCCCEEEECCCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA