Definition | Yersinia pestis Nepal516, complete genome. |
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Accession | NC_008149 |
Length | 4,534,590 |
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The map label for this gene is 108811214
Identifier: 108811214
GI number: 108811214
Start: 1207924
End: 1208325
Strand: Reverse
Name: 108811214
Synonym: YPN_1049
Alternate gene names: NA
Gene position: 1208325-1207924 (Counterclockwise)
Preceding gene: 108811215
Following gene: 108811210
Centisome position: 26.65
GC content: 33.08
Gene sequence:
>402_bases GTGGTTAAGATAAATAGGCCATTGTTTGGTGCATTTGCAGTCTTTCTTCTTTTTCTTTCATGTTGGGTTAGCTGGTTTTC TTTAAATGGATACTGGGATTTTTTTAAATTAAGTGATGTTATTATCTTCTCATGGAAAGTTGGAGTGATGATATTTGGTG CTCCTGTATTGTTTTATTTTTCATATCTTGCATTTTATTGTGCAATAAAAAATAAACCTGCAAAGGTGAATAATAAACTG GCTAATACATTCGCTATGTTAGCCATGCTGGGTGTTGTGATTAGTTTTTTTTCATCTGTATATATCGGTTATAGCCTCAC CGAATATGGTTATAAGCTATGCTCAAGATCATCTTGGATGTCCCCTAATGAATACGTAAAAGATATAAAGCTATGTCCAT AG
Upstream 100 bases:
>100_bases ACGAATATAGAATAAGCGAAAAAAAAAATAAAAACACATAGAGTACACAATATTCCTTATCATCCAGACCAATTATTTAG CGCTTGGGGGAGGTTCAGTC
Downstream 100 bases:
>100_bases TTAACCGCCTCTTACTTCTCCCAAAAATAATTTTGGTAAACAAGCCAATTGAAGAATATAAATATGTTCAAGCACACTTG AAAAAGTGTGCTTGATATCA
Product: membrane protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 133; Mature: 133
Protein sequence:
>133_residues MVKINRPLFGAFAVFLLFLSCWVSWFSLNGYWDFFKLSDVIIFSWKVGVMIFGAPVLFYFSYLAFYCAIKNKPAKVNNKL ANTFAMLAMLGVVISFFSSVYIGYSLTEYGYKLCSRSSWMSPNEYVKDIKLCP
Sequences:
>Translated_133_residues MVKINRPLFGAFAVFLLFLSCWVSWFSLNGYWDFFKLSDVIIFSWKVGVMIFGAPVLFYFSYLAFYCAIKNKPAKVNNKL ANTFAMLAMLGVVISFFSSVYIGYSLTEYGYKLCSRSSWMSPNEYVKDIKLCP >Mature_133_residues MVKINRPLFGAFAVFLLFLSCWVSWFSLNGYWDFFKLSDVIIFSWKVGVMIFGAPVLFYFSYLAFYCAIKNKPAKVNNKL ANTFAMLAMLGVVISFFSSVYIGYSLTEYGYKLCSRSSWMSPNEYVKDIKLCP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15315; Mature: 15315
Theoretical pI: Translated: 9.54; Mature: 9.54
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 6.8 %Cys+Met (Translated Protein) 3.0 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 6.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVKINRPLFGAFAVFLLFLSCWVSWFSLNGYWDFFKLSDVIIFSWKVGVMIFGAPVLFYF CCEECCCHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHEEHHHHHHHHHHHHHHHHH SYLAFYCAIKNKPAKVNNKLANTFAMLAMLGVVISFFSSVYIGYSLTEYGYKLCSRSSWM HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC SPNEYVKDIKLCP CHHHHHHHHCCCC >Mature Secondary Structure MVKINRPLFGAFAVFLLFLSCWVSWFSLNGYWDFFKLSDVIIFSWKVGVMIFGAPVLFYF CCEECCCHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHEEHHHHHHHHHHHHHHHHH SYLAFYCAIKNKPAKVNNKLANTFAMLAMLGVVISFFSSVYIGYSLTEYGYKLCSRSSWM HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC SPNEYVKDIKLCP CHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA