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The map label for this gene is ybbJ [H]

Identifier: 108811170

GI number: 108811170

Start: 1164184

End: 1164633

Strand: Reverse

Name: ybbJ [H]

Synonym: YPN_1005

Alternate gene names: 108811170

Gene position: 1164633-1164184 (Counterclockwise)

Preceding gene: 108811171

Following gene: 108811168

Centisome position: 25.68

GC content: 50.22

Gene sequence:

>450_bases
ATGCTGGAGGAAATTGCAGTAAATCCAAATTGGTTTTGGCTATCACTTGGCGGGCTATTATTGGCCGCTGAGATGCTGGG
AGCGAGTGGCTATCTGTTGTGGAGCGGTATTGCCGCCGTCCTTGTTGGCGTTCTGGTATGGCTGTTCCCCTTTAGCTGGG
AAATGCAAGGCGTGCTGTTCTCCATTCTGACTGTCGTGTCTGCTTTCCTATGGTGGTATTGGTTGAGTAAACGCACTAAA
CCGCAACCTGCCATGCTTAACCAACGTAATCATCAACTGCTTGGCATACGGGCAACATTGACCGAGCCAACGGTTGATGG
CTATGGCCGGATGAAGGTCGGTGACAGCAGTTGGCGAATTTACTGCGCTACCGAGCTTAACCCAGGAACTGAAGTTGAAG
TGATTTTGGTAGAAGGTAATACCTTGCATGTCCGTGCCGTTAATCGCTAG

Upstream 100 bases:

>100_bases
AAGTCATTATGATGCCGCTGGAAGCCAGTAGCCTCATGGGTGCTATCGGTGGTATTGCAGAACTGATTGGTGAGAGTAAA
AACAGCCGAGGTAAATAACC

Downstream 100 bases:

>100_bases
CGTTTACATTGACAGCCTCACGTCATTGTCACTACAGCAAGGCAGTAAACAAACAGCCCGAATCACTTACTCTGGTAGGT
GATTCGGGTTATTTATCACG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MLEEIAVNPNWFWLSLGGLLLAAEMLGASGYLLWSGIAAVLVGVLVWLFPFSWEMQGVLFSILTVVSAFLWWYWLSKRTK
PQPAMLNQRNHQLLGIRATLTEPTVDGYGRMKVGDSSWRIYCATELNPGTEVEVILVEGNTLHVRAVNR

Sequences:

>Translated_149_residues
MLEEIAVNPNWFWLSLGGLLLAAEMLGASGYLLWSGIAAVLVGVLVWLFPFSWEMQGVLFSILTVVSAFLWWYWLSKRTK
PQPAMLNQRNHQLLGIRATLTEPTVDGYGRMKVGDSSWRIYCATELNPGTEVEVILVEGNTLHVRAVNR
>Mature_149_residues
MLEEIAVNPNWFWLSLGGLLLAAEMLGASGYLLWSGIAAVLVGVLVWLFPFSWEMQGVLFSILTVVSAFLWWYWLSKRTK
PQPAMLNQRNHQLLGIRATLTEPTVDGYGRMKVGDSSWRIYCATELNPGTEVEVILVEGNTLHVRAVNR

Specific function: Unknown

COG id: COG1585

COG function: function code OU; Membrane protein implicated in regulation of membrane protease activity

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.jannaschii MJ0826 [H]

Homologues:

Organism=Escherichia coli, GI145693099, Length=151, Percent_Identity=58.2781456953642, Blast_Score=157, Evalue=2e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR002810 [H]

Pfam domain/function: PF01957 NfeD [H]

EC number: NA

Molecular weight: Translated: 16765; Mature: 16765

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEEIAVNPNWFWLSLGGLLLAAEMLGASGYLLWSGIAAVLVGVLVWLFPFSWEMQGVLF
CCCCEECCCCEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
SILTVVSAFLWWYWLSKRTKPQPAMLNQRNHQLLGIRATLTEPTVDGYGRMKVGDSSWRI
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEECCCCEEE
YCATELNPGTEVEVILVEGNTLHVRAVNR
EEEEECCCCCCEEEEEEECCEEEEEEECC
>Mature Secondary Structure
MLEEIAVNPNWFWLSLGGLLLAAEMLGASGYLLWSGIAAVLVGVLVWLFPFSWEMQGVLF
CCCCEECCCCEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
SILTVVSAFLWWYWLSKRTKPQPAMLNQRNHQLLGIRATLTEPTVDGYGRMKVGDSSWRI
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEECCCCEEE
YCATELNPGTEVEVILVEGNTLHVRAVNR
EEEEECCCCCCEEEEEEECCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]