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The map label for this gene is cyoA [H]

Identifier: 108811092

GI number: 108811092

Start: 1076987

End: 1077943

Strand: Reverse

Name: cyoA [H]

Synonym: YPN_0927

Alternate gene names: 108811092

Gene position: 1077943-1076987 (Counterclockwise)

Preceding gene: 108811093

Following gene: 108811091

Centisome position: 23.77

GC content: 44.72

Gene sequence:

>957_bases
ATGAGACTTAAGAAATACATTAAAAATATGGGAATATTGTCTTTATTTGCAGCCACCGTCATGCTAAGTGGTTGCAATAT
GGTATTGATGAATCCCAAAGGCGCAATCGGAGTCGAACAAAAAACGCTGATACTGACTGCTATCGGTTTGATGTTGATCG
TCGTTATTCCGGTTATTTTTATGGCGTTTGCTTTTGCCTGGAAGTTCCGAGCCTCCAACAAAAGTGCAACTTACACCCCG
AACTGGTCCCACTCCAACAAAATTGAGCTTGTTGTTTGGGCTGTTCCAATCATTATCATCGCTATTTTGGCTACGATAAC
GTGGAAAACAACCCACGAACTTGATCCATTCAAACCTATCGTTGTGGCGGGTAAAGATCCGATCACCATCGAAGTGGTCT
CCCTTGACTGGAAATGGTTATTTATCTACCCAGAACAAGGCATCGCTACCGTAAATGAACTGGCCTTCCCTACTGGGGTT
CCGGTGAACTTCAAAATCACGTCCAACTCAGTAATGAACTCGTTCTTTATCCCTCAGTTAGGCGGGCAGATTTATGCGAT
GGCCGGGATGCAGACCAAATTGCATCTGATTGCCAATGAACCAGGTAAATACAACGGTATTTCCGGTAGCTTCAGTGGCC
AAGGCTTCTCTGGTATGAAATTTACTGCAATCGCAACACCAACGCAGGAAGACTTCAACCAATGGGTCGAACAAGTGAAA
AAATCGCCGAACACCCTGAATACAACTAACGATTTCGAGAAACTGGCTAAGCCCAGTGAAAATAACCCGGTGGAATACTT
CTCCAGTATCAAACCGGCACTATTTAAAGGAATCATTGGTAAGTTTATGGGCGATATGAACATGCCAAAAAATGGCCATG
ACATGCCAAAAGGCATGGATATGAGCCAGGGCATGGAAATGGGCGAACACACTGCTCACGCCGGAGCCGAGGAATAA

Upstream 100 bases:

>100_bases
CTGACAGAATATTAAGCATGTTTACAGTCCTGCAACCTTCCCGTAAAATGCCCGCACACATGAAACGACAATAGAGCCAT
TTTGTAATTGAGGTCGTTAG

Downstream 100 bases:

>100_bases
AACGATGTTGGGAAAATTAACACTTGATGCGGTTCCATTAGGCGAACCAATCATAATGGTGACCGTTGCCGCAATTATTA
TTGGAGGAGCGGCACTGGTC

Product: cytochrome o ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome o subunit 2; Cytochrome o ubiquinol oxidase subunit 2; Ubiquinol oxidase chain B; Oxidase BO(3) subunit 2; Ubiquinol oxidase polypeptide II [H]

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MRLKKYIKNMGILSLFAATVMLSGCNMVLMNPKGAIGVEQKTLILTAIGLMLIVVIPVIFMAFAFAWKFRASNKSATYTP
NWSHSNKIELVVWAVPIIIIAILATITWKTTHELDPFKPIVVAGKDPITIEVVSLDWKWLFIYPEQGIATVNELAFPTGV
PVNFKITSNSVMNSFFIPQLGGQIYAMAGMQTKLHLIANEPGKYNGISGSFSGQGFSGMKFTAIATPTQEDFNQWVEQVK
KSPNTLNTTNDFEKLAKPSENNPVEYFSSIKPALFKGIIGKFMGDMNMPKNGHDMPKGMDMSQGMEMGEHTAHAGAEE

Sequences:

>Translated_318_residues
MRLKKYIKNMGILSLFAATVMLSGCNMVLMNPKGAIGVEQKTLILTAIGLMLIVVIPVIFMAFAFAWKFRASNKSATYTP
NWSHSNKIELVVWAVPIIIIAILATITWKTTHELDPFKPIVVAGKDPITIEVVSLDWKWLFIYPEQGIATVNELAFPTGV
PVNFKITSNSVMNSFFIPQLGGQIYAMAGMQTKLHLIANEPGKYNGISGSFSGQGFSGMKFTAIATPTQEDFNQWVEQVK
KSPNTLNTTNDFEKLAKPSENNPVEYFSSIKPALFKGIIGKFMGDMNMPKNGHDMPKGMDMSQGMEMGEHTAHAGAEE
>Mature_318_residues
MRLKKYIKNMGILSLFAATVMLSGCNMVLMNPKGAIGVEQKTLILTAIGLMLIVVIPVIFMAFAFAWKFRASNKSATYTP
NWSHSNKIELVVWAVPIIIIAILATITWKTTHELDPFKPIVVAGKDPITIEVVSLDWKWLFIYPEQGIATVNELAFPTGV
PVNFKITSNSVMNSFFIPQLGGQIYAMAGMQTKLHLIANEPGKYNGISGSFSGQGFSGMKFTAIATPTQEDFNQWVEQVK
KSPNTLNTTNDFEKLAKPSENNPVEYFSSIKPALFKGIIGKFMGDMNMPKNGHDMPKGMDMSQGMEMGEHTAHAGAEE

Specific function: Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at high aeration [H]

COG id: COG1622

COG function: function code C; Heme/copper-type cytochrome/quinol oxidases, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c oxidase subunit 2 family [H]

Homologues:

Organism=Escherichia coli, GI1786635, Length=317, Percent_Identity=66.8769716088328, Blast_Score=432, Evalue=1e-122,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012141
- InterPro:   IPR010514
- InterPro:   IPR008972
- InterPro:   IPR015964
- InterPro:   IPR002429
- InterPro:   IPR011759
- InterPro:   IPR006333 [H]

Pfam domain/function: PF00116 COX2; PF06481 COX_ARM [H]

EC number: 1.10.3.-

Molecular weight: Translated: 35049; Mature: 35049

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50999 COX2_TM ; PS50857 COX2_CUA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
6.0 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
6.0 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLKKYIKNMGILSLFAATVMLSGCNMVLMNPKGAIGVEQKTLILTAIGLMLIVVIPVIF
CCHHHHHHHCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
MAFAFAWKFRASNKSATYTPNWSHSNKIELVVWAVPIIIIAILATITWKTTHELDPFKPI
HHHHHHHHEECCCCCCEECCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCE
VVAGKDPITIEVVSLDWKWLFIYPEQGIATVNELAFPTGVPVNFKITSNSVMNSFFIPQL
EEECCCCEEEEEEEECEEEEEEECCCCCHHHHHHCCCCCCCEEEEECCCHHHHHHCCHHC
GGQIYAMAGMQTKLHLIANEPGKYNGISGSFSGQGFSGMKFTAIATPTQEDFNQWVEQVK
CCCEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHH
KSPNTLNTTNDFEKLAKPSENNPVEYFSSIKPALFKGIIGKFMGDMNMPKNGHDMPKGMD
CCCCCCCCCHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
MSQGMEMGEHTAHAGAEE
HHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRLKKYIKNMGILSLFAATVMLSGCNMVLMNPKGAIGVEQKTLILTAIGLMLIVVIPVIF
CCHHHHHHHCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
MAFAFAWKFRASNKSATYTPNWSHSNKIELVVWAVPIIIIAILATITWKTTHELDPFKPI
HHHHHHHHEECCCCCCEECCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCE
VVAGKDPITIEVVSLDWKWLFIYPEQGIATVNELAFPTGVPVNFKITSNSVMNSFFIPQL
EEECCCCEEEEEEEECEEEEEEECCCCCHHHHHHCCCCCCCEEEEECCCHHHHHHCCHHC
GGQIYAMAGMQTKLHLIANEPGKYNGISGSFSGQGFSGMKFTAIATPTQEDFNQWVEQVK
CCCEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHH
KSPNTLNTTNDFEKLAKPSENNPVEYFSSIKPALFKGIIGKFMGDMNMPKNGHDMPKGMD
CCCCCCCCCHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
MSQGMEMGEHTAHAGAEE
HHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]