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The map label for this gene is 108797970

Identifier: 108797970

GI number: 108797970

Start: 1103280

End: 1103888

Strand: Reverse

Name: 108797970

Synonym: Mmcs_0997

Alternate gene names: NA

Gene position: 1103888-1103280 (Counterclockwise)

Preceding gene: 108797971

Following gene: 108797969

Centisome position: 19.35

GC content: 70.77

Gene sequence:

>609_bases
GTGGCTGGTCGCGGTGGGCGCGACCAAGCACGCCGAAATCACTCGGGAAAAGGGCGTCGGAGTTCGGGGCGCAACGGCGA
CGATGAGGGTGTGAGCGGCGAACCAGACGGTGACGACGCTCCGCGGACCCTGCTGGCGCTCTACGACGATGCCCTGCCGA
CGGTGTACGGCTACTTCGTCAGACGCTGTCCGGACCGCGGAACCGCCGAGGACCTGACGTCGGAGACCTTCCTGGCGGCG
ATGGACGCCGCCCGGCGGGGCACCTCCGCGCCGATCAGCGTGCCGTGGCTGATCGGGGTGGCCCGGCACAAACTGGCCGA
CCACTACCGGCGCCGACACGACCGGCACGCGGTCCCGGTCGGCGAGGTGCCCGAACCCGGTGAGCCTGTCGACGGCTGGG
AGGCCGAACTGGACCGGATCGTCGCCGAGAGCGTGCTGGCGAAACTCGCCGAACAGCACCGGACGGTACTCGCGCTGCGC
TATCTCGACGGCTGTTCGGTCCCCGAATGCGCCGAGTTGATCGGCCGGACGGTGCACGCCACCGAGGCCCTGCTGGTGCG
GGCCCGTCGCGCATTCCGCTCGCACTACCCGGAAGGAGGCACGCCGTGA

Upstream 100 bases:

>100_bases
CAGTGGCTGGCCGACGAGGCGGTGTCGCTGGCGCAGGCGCTGGGCGACGCCTTCGACACCGTCCGCGACGGTCTGCGCGC
CCTGCATTAGCGATTTCGGC

Downstream 100 bases:

>100_bases
ACGACAGCACCGACCCGCTGTGGGTCCTGCACGGTGACGAGCTTCCGGTCCAGCCCGACCCGGCGTTCGCGGCGCGGTTG
CGCCGCCGGCTGGAGTCGGC

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: RNA Polymerase ECF-Type Sigma Factor; Sigma-70 Family RNA Polymerase Sigma Factor; RNA Polymerase

Number of amino acids: Translated: 202; Mature: 201

Protein sequence:

>202_residues
MAGRGGRDQARRNHSGKGRRSSGRNGDDEGVSGEPDGDDAPRTLLALYDDALPTVYGYFVRRCPDRGTAEDLTSETFLAA
MDAARRGTSAPISVPWLIGVARHKLADHYRRRHDRHAVPVGEVPEPGEPVDGWEAELDRIVAESVLAKLAEQHRTVLALR
YLDGCSVPECAELIGRTVHATEALLVRARRAFRSHYPEGGTP

Sequences:

>Translated_202_residues
MAGRGGRDQARRNHSGKGRRSSGRNGDDEGVSGEPDGDDAPRTLLALYDDALPTVYGYFVRRCPDRGTAEDLTSETFLAA
MDAARRGTSAPISVPWLIGVARHKLADHYRRRHDRHAVPVGEVPEPGEPVDGWEAELDRIVAESVLAKLAEQHRTVLALR
YLDGCSVPECAELIGRTVHATEALLVRARRAFRSHYPEGGTP
>Mature_201_residues
AGRGGRDQARRNHSGKGRRSSGRNGDDEGVSGEPDGDDAPRTLLALYDDALPTVYGYFVRRCPDRGTAEDLTSETFLAAM
DAARRGTSAPISVPWLIGVARHKLADHYRRRHDRHAVPVGEVPEPGEPVDGWEAELDRIVAESVLAKLAEQHRTVLALRY
LDGCSVPECAELIGRTVHATEALLVRARRAFRSHYPEGGTP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22100; Mature: 21969

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGRGGRDQARRNHSGKGRRSSGRNGDDEGVSGEPDGDDAPRTLLALYDDALPTVYGYFV
CCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
RRCPDRGTAEDLTSETFLAAMDAARRGTSAPISVPWLIGVARHKLADHYRRRHDRHAVPV
HHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
GEVPEPGEPVDGWEAELDRIVAESVLAKLAEQHRTVLALRYLDGCSVPECAELIGRTVHA
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHH
TEALLVRARRAFRSHYPEGGTP
HHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
AGRGGRDQARRNHSGKGRRSSGRNGDDEGVSGEPDGDDAPRTLLALYDDALPTVYGYFV
CCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
RRCPDRGTAEDLTSETFLAAMDAARRGTSAPISVPWLIGVARHKLADHYRRRHDRHAVPV
HHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
GEVPEPGEPVDGWEAELDRIVAESVLAKLAEQHRTVLALRYLDGCSVPECAELIGRTVHA
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHH
TEALLVRARRAFRSHYPEGGTP
HHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA