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The map label for this gene is insF1 [C]

Identifier: 108797904

GI number: 108797904

Start: 1024188

End: 1025027

Strand: Direct

Name: insF1 [C]

Synonym: Mmcs_0930

Alternate gene names: 108797904

Gene position: 1024188-1025027 (Clockwise)

Preceding gene: 108797903

Following gene: 108797905

Centisome position: 17.95

GC content: 65.12

Gene sequence:

>840_bases
GTGGCCCCGAGCACCTACTACGACGCCAAAACCCGCCCACCGTCGGCGCGGGCACAGCGCGATGCAGTCCTGGGGCCGGC
GTTGCGCCAGCTCTGGAAGGACAACTACTGCGTCTATGGGGCTCACAAGCTGTGGAAAACCGCCCGCCGGGCTGGCTATG
ACGTCGGCCGCGACCAGGTGGCCCGACTGATGCGGGCCGCCGGAATCCAGGGGGTACGGCGCGGCAAACGTGTCCGCACC
ACCAAACCTGACCCGGTAGCAGCGCGGCACCCGGACCTGGTGAAGCGCAAGTTCACCGCGACGGCCCCGAACCAGCTCTG
GGTGACCGACCTGACGTTCGTGCCGACATGGGCCGGGGTGGCCTATGTGTGCTTCATCGTCGATGCGCACTCGCGGATGA
TCGTGGGGTGGCGGGTAGCGTCGCATATGCGCACTTCCATGGTGCTAGACGCGTTGGAGATGGCACGCTGGTCACGCGGA
ACTACATTGCAGAACTTGATATGTCACTCCGATGCCGGGTCGCAATTCACCTCGATTCGCTACGGAGAGCGCCTCGCTGA
GATCGGCGGCGTCCCATCCATCGGCACCGTCGGGGACAGCTTCGATAACGCCCTCGCCGAGACGGTCAACGGATACTACA
AAGCCGAGCTGATCTACGGGCCGGCCCGCAGCGGGCCGTGGAAGACCGTCGAAGACGTCGAACTTGCCACCCTCAGCTGG
GTCTACTGGCACAACACCAGCCGCCTGCACAGCTACCTTGGCGACCTCCCGCCGGCCGAGTTCGAAGCGGCGTTCTACGA
TGCATCCCGGAGCGGCCAACCCCTGGTCGAAATCCAATAG

Upstream 100 bases:

>100_bases
TCGACCGCCAACACAAGAAATAGTCGCGTTCATCGACGACAATCGCGAGGATTTCGGGGTCGAGCCCATCTGCACGGTCC
TGCGCAGCGCAGGCCTGCAG

Downstream 100 bases:

>100_bases
CCCGAGCCTCCAGCAGACCCAGGGCGATTCATGGAGCTTGTCCGACTGGGCTTGGTGACCTGTGGACCAGCGGCCGGGCC
GGGAGAACACACCCGCAAGC

Product: integrase catalytic subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 278

Protein sequence:

>279_residues
MAPSTYYDAKTRPPSARAQRDAVLGPALRQLWKDNYCVYGAHKLWKTARRAGYDVGRDQVARLMRAAGIQGVRRGKRVRT
TKPDPVAARHPDLVKRKFTATAPNQLWVTDLTFVPTWAGVAYVCFIVDAHSRMIVGWRVASHMRTSMVLDALEMARWSRG
TTLQNLICHSDAGSQFTSIRYGERLAEIGGVPSIGTVGDSFDNALAETVNGYYKAELIYGPARSGPWKTVEDVELATLSW
VYWHNTSRLHSYLGDLPPAEFEAAFYDASRSGQPLVEIQ

Sequences:

>Translated_279_residues
MAPSTYYDAKTRPPSARAQRDAVLGPALRQLWKDNYCVYGAHKLWKTARRAGYDVGRDQVARLMRAAGIQGVRRGKRVRT
TKPDPVAARHPDLVKRKFTATAPNQLWVTDLTFVPTWAGVAYVCFIVDAHSRMIVGWRVASHMRTSMVLDALEMARWSRG
TTLQNLICHSDAGSQFTSIRYGERLAEIGGVPSIGTVGDSFDNALAETVNGYYKAELIYGPARSGPWKTVEDVELATLSW
VYWHNTSRLHSYLGDLPPAEFEAAFYDASRSGQPLVEIQ
>Mature_278_residues
APSTYYDAKTRPPSARAQRDAVLGPALRQLWKDNYCVYGAHKLWKTARRAGYDVGRDQVARLMRAAGIQGVRRGKRVRTT
KPDPVAARHPDLVKRKFTATAPNQLWVTDLTFVPTWAGVAYVCFIVDAHSRMIVGWRVASHMRTSMVLDALEMARWSRGT
TLQNLICHSDAGSQFTSIRYGERLAEIGGVPSIGTVGDSFDNALAETVNGYYKAELIYGPARSGPWKTVEDVELATLSWV
YWHNTSRLHSYLGDLPPAEFEAAFYDASRSGQPLVEIQ

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Homo sapiens, GI310129419, Length=223, Percent_Identity=49.3273542600897, Blast_Score=201, Evalue=4e-52,
Organism=Escherichia coli, GI1788405, Length=231, Percent_Identity=31.1688311688312, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1787263, Length=231, Percent_Identity=31.1688311688312, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1786753, Length=231, Percent_Identity=31.1688311688312, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1786570, Length=231, Percent_Identity=31.1688311688312, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1786490, Length=231, Percent_Identity=31.1688311688312, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1789981, Length=264, Percent_Identity=24.2424242424242, Blast_Score=95, Evalue=6e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 31136; Mature: 31004

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPSTYYDAKTRPPSARAQRDAVLGPALRQLWKDNYCVYGAHKLWKTARRAGYDVGRDQV
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHCCCCCCHHHH
ARLMRAAGIQGVRRGKRVRTTKPDPVAARHPDLVKRKFTATAPNQLWVTDLTFVPTWAGV
HHHHHHHCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEEEECCHHHHH
AYVCFIVDAHSRMIVGWRVASHMRTSMVLDALEMARWSRGTTLQNLICHSDAGSQFTSIR
HHHHHHEECCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHH
YGERLAEIGGVPSIGTVGDSFDNALAETVNGYYKAELIYGPARSGPWKTVEDVELATLSW
HHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCEEEEEE
VYWHNTSRLHSYLGDLPPAEFEAAFYDASRSGQPLVEIQ
EEECCHHHHHHHHHCCCCCHHHHHHHCCCCCCCCEEEEC
>Mature Secondary Structure 
APSTYYDAKTRPPSARAQRDAVLGPALRQLWKDNYCVYGAHKLWKTARRAGYDVGRDQV
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHCCCCCCHHHH
ARLMRAAGIQGVRRGKRVRTTKPDPVAARHPDLVKRKFTATAPNQLWVTDLTFVPTWAGV
HHHHHHHCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEEEECCHHHHH
AYVCFIVDAHSRMIVGWRVASHMRTSMVLDALEMARWSRGTTLQNLICHSDAGSQFTSIR
HHHHHHEECCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHH
YGERLAEIGGVPSIGTVGDSFDNALAETVNGYYKAELIYGPARSGPWKTVEDVELATLSW
HHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCEEEEEE
VYWHNTSRLHSYLGDLPPAEFEAAFYDASRSGQPLVEIQ
EEECCHHHHHHHHHCCCCCHHHHHHHCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]