Definition | Mycobacterium sp. MCS chromosome, complete genome. |
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Accession | NC_008146 |
Length | 5,705,448 |
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The map label for this gene is 108797260
Identifier: 108797260
GI number: 108797260
Start: 320024
End: 321562
Strand: Direct
Name: 108797260
Synonym: Mmcs_0280
Alternate gene names: NA
Gene position: 320024-321562 (Clockwise)
Preceding gene: 108797259
Following gene: 108797262
Centisome position: 5.61
GC content: 68.49
Gene sequence:
>1539_bases ATGCTCACCCGTTTCGTGCGTACCCAGCTGATCATCTTCACGGTCACCGCTGTGGTGGCGATGGGTGTGATGATCTTCGG GTACCTGCAGGCTCCCACCCTGCTCGGGATCGGCCGGATGACGGTGACCGTCGAACTGCCGGGCACCGGTGGCCTCTACC GGTTTTCGAACGTGACCTACCGCGGTGTCGAGGTCGGGAAGGTCACCGACGTGCGCGCCACCCGGCAGGGCGCGGTGGCC ACGCTGTCGCTCGGCACGAACCAGGACATCCCCGCCGACCTGCACGCCGCTGTGCGCAGTGTGTCGGCGGTCGGTGAGCA GTACGTCGATCTGCAGCCGCGCACCGGATCCGCTCCGTATCTGCACGACGGTTCGGTCATCGGTGTGGAGAACACGTCGA TCCCGCAGGCGGTCGGGCCGATGCTCGACGAGGTGAGCGCGATGATCGACAGCATTCCCAAGGACAAGATCAGCGGCCTG CTCGACGAATCGGCGAAGGCCCTCAACGGCTCCGCATACGATCTCGGATCGATGCTCGACTCGTCGGCGACGGTGGTCGG GGACGCCAAGGGCGTCAGCGGCGAGATGCGTTCACTCATCGACGACAGCGGGCCACTGCTCGAGGGTCAGGCGCAGACCG CCGATCAGCTCCGCACCTGGGCCCGCAGCCTGGCCGGTGTCACCGGTCAGGTGGCCGCGAACGACCCACAGGTCCGCACG CTGCTGGGCACCGGTCCCGGTGCTGCCGACGAGGCGTCGCGGCTGCTCAACGCCGTCAAACCGACGCTGCCGGTGCTGCT GGCCAACCTCACCACCATCGGTCAGGTCGCGGTCACCTACCACGCATCGATCGAACAGCTCCTCGTACTGCTTCCGCCGT ATGTGGCCGCGACGCAGACGGTGGGCGTCTCGCGGAACAACCCGACGGGAATGTCGTTGGGCGACTTCACCCTGAACCTC AACGATCCGCCCGCGTGCACCGTGGGGTTCCTGCCCCCGTCGTCGTGGCGCTCACCCGACGACGAGAGCGACATCGACAC CCCCGACGGCCTGTACTGCAAACTGCCGCAGGACTCCCCGATCGGGGTGCGCGGGGCCCGCAACTACCCGTGCATGGGCC AGCCGGGCAAGCGGGCGGCCACCGCCGAACAGTGCGCCAGCGACAAACCGTTCGAGCCCCTGGCCATGCGTCAGCACGTG CTGGGTCCCTACCCGTTCGATCCCTCCCTTGTCGCGCAGGGGATCCCGCCGGACGATCGCGTCGACTCCGACGAGCAGCT CTACGGTCCGGTCGGCGGCACGCCCATGCCGCCGCCGAGTCCCGAGCCGGCACCGGCGCCCGGTGGCCCGGCCGTCGCGC CGAGCGCATTCACCCCCGGTGAGTCCGGTGGTCCTTCGGTGGCGATCGCCACCTACGATCCGCAGACCGGGAAATACGCC ACACCCGACGGCAAGGTGTTCACGCAGCCTGCGCTCGGCTCGAAAGATGCCGGCGGGCAGAACAAGACATGGCAGGACCT GCTGCCGACAGGGGCCTGA
Upstream 100 bases:
>100_bases CGGTCGCCCCGCCGACGGCGGTGGCGCCTGTTCCCGAGCTGACCGAGACGTCCGACGGGGTCGACACCGTCGATCCGTCC CCGAGCGCCGGGGGTAACTG
Downstream 100 bases:
>100_bases GAGGTCAGCTCAGCTTGACCAGTTTGAACGGCATCGTGATGAACAGCGGCCGGCTGACGCCGCAGGCGCCGCTCGGGCCG GTTGTCTGGTCTTCGCCGGT
Product: virulence factor MCE-like protein
Products: NA
Alternate protein names: Mce Family Protein; Secreted Protein; MCE Family Protein; MCE-Family F; Mce Family F; MCE-Family Protein; Mce-Family F; Mammalian Cell Entry Related Domain Protein; Mce-Related Protein; MCE-Family; Mce Family
Number of amino acids: Translated: 512; Mature: 512
Protein sequence:
>512_residues MLTRFVRTQLIIFTVTAVVAMGVMIFGYLQAPTLLGIGRMTVTVELPGTGGLYRFSNVTYRGVEVGKVTDVRATRQGAVA TLSLGTNQDIPADLHAAVRSVSAVGEQYVDLQPRTGSAPYLHDGSVIGVENTSIPQAVGPMLDEVSAMIDSIPKDKISGL LDESAKALNGSAYDLGSMLDSSATVVGDAKGVSGEMRSLIDDSGPLLEGQAQTADQLRTWARSLAGVTGQVAANDPQVRT LLGTGPGAADEASRLLNAVKPTLPVLLANLTTIGQVAVTYHASIEQLLVLLPPYVAATQTVGVSRNNPTGMSLGDFTLNL NDPPACTVGFLPPSSWRSPDDESDIDTPDGLYCKLPQDSPIGVRGARNYPCMGQPGKRAATAEQCASDKPFEPLAMRQHV LGPYPFDPSLVAQGIPPDDRVDSDEQLYGPVGGTPMPPPSPEPAPAPGGPAVAPSAFTPGESGGPSVAIATYDPQTGKYA TPDGKVFTQPALGSKDAGGQNKTWQDLLPTGA
Sequences:
>Translated_512_residues MLTRFVRTQLIIFTVTAVVAMGVMIFGYLQAPTLLGIGRMTVTVELPGTGGLYRFSNVTYRGVEVGKVTDVRATRQGAVA TLSLGTNQDIPADLHAAVRSVSAVGEQYVDLQPRTGSAPYLHDGSVIGVENTSIPQAVGPMLDEVSAMIDSIPKDKISGL LDESAKALNGSAYDLGSMLDSSATVVGDAKGVSGEMRSLIDDSGPLLEGQAQTADQLRTWARSLAGVTGQVAANDPQVRT LLGTGPGAADEASRLLNAVKPTLPVLLANLTTIGQVAVTYHASIEQLLVLLPPYVAATQTVGVSRNNPTGMSLGDFTLNL NDPPACTVGFLPPSSWRSPDDESDIDTPDGLYCKLPQDSPIGVRGARNYPCMGQPGKRAATAEQCASDKPFEPLAMRQHV LGPYPFDPSLVAQGIPPDDRVDSDEQLYGPVGGTPMPPPSPEPAPAPGGPAVAPSAFTPGESGGPSVAIATYDPQTGKYA TPDGKVFTQPALGSKDAGGQNKTWQDLLPTGA >Mature_512_residues MLTRFVRTQLIIFTVTAVVAMGVMIFGYLQAPTLLGIGRMTVTVELPGTGGLYRFSNVTYRGVEVGKVTDVRATRQGAVA TLSLGTNQDIPADLHAAVRSVSAVGEQYVDLQPRTGSAPYLHDGSVIGVENTSIPQAVGPMLDEVSAMIDSIPKDKISGL LDESAKALNGSAYDLGSMLDSSATVVGDAKGVSGEMRSLIDDSGPLLEGQAQTADQLRTWARSLAGVTGQVAANDPQVRT LLGTGPGAADEASRLLNAVKPTLPVLLANLTTIGQVAVTYHASIEQLLVLLPPYVAATQTVGVSRNNPTGMSLGDFTLNL NDPPACTVGFLPPSSWRSPDDESDIDTPDGLYCKLPQDSPIGVRGARNYPCMGQPGKRAATAEQCASDKPFEPLAMRQHV LGPYPFDPSLVAQGIPPDDRVDSDEQLYGPVGGTPMPPPSPEPAPAPGGPAVAPSAFTPGESGGPSVAIATYDPQTGKYA TPDGKVFTQPALGSKDAGGQNKTWQDLLPTGA
Specific function: Unknown
COG id: COG1463
COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53182; Mature: 53182
Theoretical pI: Translated: 4.44; Mature: 4.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTRFVRTQLIIFTVTAVVAMGVMIFGYLQAPTLLGIGRMTVTVELPGTGGLYRFSNVTY CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCEEEEEEEECCCCCEEEECCEEE RGVEVGKVTDVRATRQGAVATLSLGTNQDIPADLHAAVRSVSAVGEQYVDLQPRTGSAPY ECEEECCEECCHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCCCE LHDGSVIGVENTSIPQAVGPMLDEVSAMIDSIPKDKISGLLDESAKALNGSAYDLGSMLD EECCCEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHC SSATVVGDAKGVSGEMRSLIDDSGPLLEGQAQTADQLRTWARSLAGVTGQVAANDPQVRT CCCEEEECCCCCCHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHCCCCCEEECCCCCEEE LLGTGPGAADEASRLLNAVKPTLPVLLANLTTIGQVAVTYHASIEQLLVLLPPYVAATQT EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHCCCHHHHHHE VGVSRNNPTGMSLGDFTLNLNDPPACTVGFLPPSSWRSPDDESDIDTPDGLYCKLPQDSP ECCCCCCCCCCEECCEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCC IGVRGARNYPCMGQPGKRAATAEQCASDKPFEPLAMRQHVLGPYPFDPSLVAQGIPPDDR CCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHCCCCCCCCC VDSDEQLYGPVGGTPMPPPSPEPAPAPGGPAVAPSAFTPGESGGPSVAIATYDPQTGKYA CCCCHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEE TPDGKVFTQPALGSKDAGGQNKTWQDLLPTGA CCCCCEEECCCCCCCCCCCCCCCHHHHCCCCC >Mature Secondary Structure MLTRFVRTQLIIFTVTAVVAMGVMIFGYLQAPTLLGIGRMTVTVELPGTGGLYRFSNVTY CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCEEEEEEEECCCCCEEEECCEEE RGVEVGKVTDVRATRQGAVATLSLGTNQDIPADLHAAVRSVSAVGEQYVDLQPRTGSAPY ECEEECCEECCHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCCCE LHDGSVIGVENTSIPQAVGPMLDEVSAMIDSIPKDKISGLLDESAKALNGSAYDLGSMLD EECCCEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHC SSATVVGDAKGVSGEMRSLIDDSGPLLEGQAQTADQLRTWARSLAGVTGQVAANDPQVRT CCCEEEECCCCCCHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHCCCCCEEECCCCCEEE LLGTGPGAADEASRLLNAVKPTLPVLLANLTTIGQVAVTYHASIEQLLVLLPPYVAATQT EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHCCCHHHHHHE VGVSRNNPTGMSLGDFTLNLNDPPACTVGFLPPSSWRSPDDESDIDTPDGLYCKLPQDSP ECCCCCCCCCCEECCEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCC IGVRGARNYPCMGQPGKRAATAEQCASDKPFEPLAMRQHVLGPYPFDPSLVAQGIPPDDR CCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHCCCCCCCCC VDSDEQLYGPVGGTPMPPPSPEPAPAPGGPAVAPSAFTPGESGGPSVAIATYDPQTGKYA CCCCHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEE TPDGKVFTQPALGSKDAGGQNKTWQDLLPTGA CCCCCEEECCCCCCCCCCCCCCCHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA