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The map label for this gene is sigZ [H]

Identifier: 108761493

GI number: 108761493

Start: 3983210

End: 3983845

Strand: Direct

Name: sigZ [H]

Synonym: MXAN_3426

Alternate gene names: 108761493

Gene position: 3983210-3983845 (Clockwise)

Preceding gene: 108757506

Following gene: 108763309

Centisome position: 43.58

GC content: 67.77

Gene sequence:

>636_bases
ATGAGCGACATGAATCAGGGAGCGGGTGCGGAGAGCGATGGCGTGGTGCGGCCCCTGTCCGCCGACGTCATTTCCAGTCT
GGTGGAGAACCACCGGGAGTTCTTGCGCTTCCTCGAGCGTCGGGTTGGGAGCCGCGCGGTGGCGGAAGACATCCTTCAGG
ATGCGTTCGTCCGTGGCATGGGCAAGGCGGAGACGCTCCGCGAAGATGAGTCGCTGACGGCATGGTTCTACAGCGTGCTG
CGCAACGCGGTCATCGACCATTACCGGCGTCGTGGCACGACGGAGCGCGCGCTGGCTTCGCTGGCCAGCGAGCTCGAGGA
GGGCCATGCGCCGGAAGCGGAACTGGCGCAGGCTGTTTGCCAGTGCGTGGGCCGGCTGGCCGGCACCCTCAAGCCCGAGT
ATGCCGAGGCGCTGCGGCGTGTGGAGGTGGAGGGCGTCAGCGTCCCGGCTTTCGCCCTGGAGGCGGGCATCACGTCCAAC
AACGCGGCGGTGCGACTGCACCGTGCTCGCAAGGCGCTCAAGAAACAGTTGGAGGTTTCGTGCGGTACGTGCGCCTCGCA
CGGCTGTCTGGACTGCACGTGCGCGACGCAGGGCGCCGAGAAGAAGGCCGGGGGCTGCGGGAGCGCGAAGGCATGA

Upstream 100 bases:

>100_bases
ATGGACGCGGACGGCATCAATCCGGACGTGCGCTTTGGTTGATGGCGAAGGGGGCAGAGGACGGCTTGCACCAGGTCCTC
TGTCCCTGTACCTGAACGGC

Downstream 100 bases:

>100_bases
CCTGACCGCGGCTCCAAAGCGACATGCCCGGCTGTTCCAGTCGACGGGCGCAGCCAAGCCGCGCGGAGCCCGAGTCCGTC
TGGGCTTCACGCGCAGGTTG

Product: ECF subfamily RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MSDMNQGAGAESDGVVRPLSADVISSLVENHREFLRFLERRVGSRAVAEDILQDAFVRGMGKAETLREDESLTAWFYSVL
RNAVIDHYRRRGTTERALASLASELEEGHAPEAELAQAVCQCVGRLAGTLKPEYAEALRRVEVEGVSVPAFALEAGITSN
NAAVRLHRARKALKKQLEVSCGTCASHGCLDCTCATQGAEKKAGGCGSAKA

Sequences:

>Translated_211_residues
MSDMNQGAGAESDGVVRPLSADVISSLVENHREFLRFLERRVGSRAVAEDILQDAFVRGMGKAETLREDESLTAWFYSVL
RNAVIDHYRRRGTTERALASLASELEEGHAPEAELAQAVCQCVGRLAGTLKPEYAEALRRVEVEGVSVPAFALEAGITSN
NAAVRLHRARKALKKQLEVSCGTCASHGCLDCTCATQGAEKKAGGCGSAKA
>Mature_210_residues
SDMNQGAGAESDGVVRPLSADVISSLVENHREFLRFLERRVGSRAVAEDILQDAFVRGMGKAETLREDESLTAWFYSVLR
NAVIDHYRRRGTTERALASLASELEEGHAPEAELAQAVCQCVGRLAGTLKPEYAEALRRVEVEGVSVPAFALEAGITSNN
AAVRLHRARKALKKQLEVSCGTCASHGCLDCTCATQGAEKKAGGCGSAKA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014304
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 22606; Mature: 22475

Theoretical pI: Translated: 6.66; Mature: 6.66

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDMNQGAGAESDGVVRPLSADVISSLVENHREFLRFLERRVGSRAVAEDILQDAFVRGM
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
GKAETLREDESLTAWFYSVLRNAVIDHYRRRGTTERALASLASELEEGHAPEAELAQAVC
CHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
QCVGRLAGTLKPEYAEALRRVEVEGVSVPAFALEAGITSNNAAVRLHRARKALKKQLEVS
HHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
CGTCASHGCLDCTCATQGAEKKAGGCGSAKA
CCCCCCCCCCEEHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SDMNQGAGAESDGVVRPLSADVISSLVENHREFLRFLERRVGSRAVAEDILQDAFVRGM
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
GKAETLREDESLTAWFYSVLRNAVIDHYRRRGTTERALASLASELEEGHAPEAELAQAVC
CHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
QCVGRLAGTLKPEYAEALRRVEVEGVSVPAFALEAGITSNNAAVRLHRARKALKKQLEVS
HHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
CGTCASHGCLDCTCATQGAEKKAGGCGSAKA
CCCCCCCCCCEEHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377 [H]