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The map label for this gene is ybhD [H]

Identifier: 108761444

GI number: 108761444

Start: 1650450

End: 1651358

Strand: Reverse

Name: ybhD [H]

Synonym: MXAN_1402

Alternate gene names: 108761444

Gene position: 1651358-1650450 (Counterclockwise)

Preceding gene: 108757376

Following gene: 108763582

Centisome position: 18.07

GC content: 67.11

Gene sequence:

>909_bases
ATGCAGCTCGAATCCTTGAAGATGTTCTGCGACGTGGTCGAGACAGGCTCATTCTCCCGCGCCGCGCAGCTCAACCACGT
CACGCAATCCGCGGTGAGCCAGCAGATTCGCGCGCTGGAGAACCGGTACGAGCAGAAGCTGCTGTCGCGCAGCGCGCGCC
AGGTGACGCCGACGCCGGCCGGGGAGCGGCTGTTCCGCGGGTGCAAGGAAATCCTCGCCCGCTTCGCCGAAGTGGAGCAG
GAGATTCGTGAGCAGGCCACCGAGGTGGCGGGTACCACCACGGTCTCCACCATCTACTCGGTGGGGTTGCACGAGCTGAA
CTCGGTGCAGAAGCAACTGCTCAAGTCGCACCCCAAGGTGAACATGCGCCTGAACTACCGGCGCAACGACCAGGTGTACG
ACGACGTGATTCTGGGCGCGGCGGAGATTGGCATCGTCGCCTATCCGCAGCCCCGCGCGGGCGTGGACATCCTCCCCTTC
CGCGACGACAAGCTGTCGGTCGTCTGTGCCCCCGACCACCCCTTCGCCACGAAGCAGAAGGTGAGCCTCACCGCGCTGTC
GGGCGTGCCCTTCATCGCGTTCGACCGCGAGGCGCCCACGCGCAAGGCGCTGGACCGGCTCTTCCGCGAGAAGAGCATCG
ACATCAACCCGGTGATGGAGATGGACAACGTGGAGACCATCAAGCGGGCGGTGGAGATGGGCCTGGGCGTGGCCATCCTC
CCCATGTCCACGGCGCAGGGCGAGGTGAAGGGCGGCTCCCTGGTCGCCAAGCCCTTCGCGGAGGGGCCGGTGTCGCGCCC
CATTGGCCTGCTCATCCGCAAGGGCAAGTACCTGGACCGCGCGTCCGCCGCGGTGCTGGAGGCGTTCAAGGCCGCCTCCA
ACGTGCCGCCGCCCACCGAGAACGCCTGA

Upstream 100 bases:

>100_bases
CCGGAGGCAGTCCTGGCGGGTTAGGTAGTTTGGCAGCCAAGTAAAGGCATTCTAATTATCTCTGGCCTAATCATTGGATT
TGAGGGTAGGAGATGACCTT

Downstream 100 bases:

>100_bases
GCGTCAGTAGAGCTTCCGGAGGCGCGCGGCGAAGAACCCGTCGAAGCCCTCCGGTCCCGGCAGCGTGCGCAGGTACGCCT
GGGACATCGGCAGCTTGAGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MQLESLKMFCDVVETGSFSRAAQLNHVTQSAVSQQIRALENRYEQKLLSRSARQVTPTPAGERLFRGCKEILARFAEVEQ
EIREQATEVAGTTTVSTIYSVGLHELNSVQKQLLKSHPKVNMRLNYRRNDQVYDDVILGAAEIGIVAYPQPRAGVDILPF
RDDKLSVVCAPDHPFATKQKVSLTALSGVPFIAFDREAPTRKALDRLFREKSIDINPVMEMDNVETIKRAVEMGLGVAIL
PMSTAQGEVKGGSLVAKPFAEGPVSRPIGLLIRKGKYLDRASAAVLEAFKAASNVPPPTENA

Sequences:

>Translated_302_residues
MQLESLKMFCDVVETGSFSRAAQLNHVTQSAVSQQIRALENRYEQKLLSRSARQVTPTPAGERLFRGCKEILARFAEVEQ
EIREQATEVAGTTTVSTIYSVGLHELNSVQKQLLKSHPKVNMRLNYRRNDQVYDDVILGAAEIGIVAYPQPRAGVDILPF
RDDKLSVVCAPDHPFATKQKVSLTALSGVPFIAFDREAPTRKALDRLFREKSIDINPVMEMDNVETIKRAVEMGLGVAIL
PMSTAQGEVKGGSLVAKPFAEGPVSRPIGLLIRKGKYLDRASAAVLEAFKAASNVPPPTENA
>Mature_302_residues
MQLESLKMFCDVVETGSFSRAAQLNHVTQSAVSQQIRALENRYEQKLLSRSARQVTPTPAGERLFRGCKEILARFAEVEQ
EIREQATEVAGTTTVSTIYSVGLHELNSVQKQLLKSHPKVNMRLNYRRNDQVYDDVILGAAEIGIVAYPQPRAGVDILPF
RDDKLSVVCAPDHPFATKQKVSLTALSGVPFIAFDREAPTRKALDRLFREKSIDINPVMEMDNVETIKRAVEMGLGVAIL
PMSTAQGEVKGGSLVAKPFAEGPVSRPIGLLIRKGKYLDRASAAVLEAFKAASNVPPPTENA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=281, Percent_Identity=25.9786476868327, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI1787530, Length=243, Percent_Identity=25.1028806584362, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1788481, Length=298, Percent_Identity=26.1744966442953, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1788748, Length=292, Percent_Identity=26.027397260274, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1790399, Length=291, Percent_Identity=25.4295532646048, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1790208, Length=245, Percent_Identity=28.5714285714286, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1788297, Length=259, Percent_Identity=25.4826254826255, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI157672245, Length=284, Percent_Identity=25, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1788887, Length=281, Percent_Identity=27.7580071174377, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI1787879, Length=252, Percent_Identity=28.1746031746032, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1786401, Length=293, Percent_Identity=26.6211604095563, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1787806, Length=296, Percent_Identity=22.972972972973, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1790262, Length=272, Percent_Identity=24.6323529411765, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1789173, Length=277, Percent_Identity=26.3537906137184, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789204, Length=303, Percent_Identity=25.0825082508251, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787589, Length=266, Percent_Identity=25.9398496240602, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI87082132, Length=253, Percent_Identity=24.1106719367589, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI145693193, Length=155, Percent_Identity=29.0322580645161, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789639, Length=123, Percent_Identity=28.4552845528455, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786713, Length=280, Percent_Identity=25.7142857142857, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1789440, Length=176, Percent_Identity=26.1363636363636, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33187; Mature: 33187

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLESLKMFCDVVETGSFSRAAQLNHVTQSAVSQQIRALENRYEQKLLSRSARQVTPTPA
CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
GERLFRGCKEILARFAEVEQEIREQATEVAGTTTVSTIYSVGLHELNSVQKQLLKSHPKV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
NMRLNYRRNDQVYDDVILGAAEIGIVAYPQPRAGVDILPFRDDKLSVVCAPDHPFATKQK
EEEEECCCCCHHHHHHHHHHHHHCEEECCCCCCCEEEEECCCCCEEEEECCCCCCCCCCC
VSLTALSGVPFIAFDREAPTRKALDRLFREKSIDINPVMEMDNVETIKRAVEMGLGVAIL
EEEEEECCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCEEEE
PMSTAQGEVKGGSLVAKPFAEGPVSRPIGLLIRKGKYLDRASAAVLEAFKAASNVPPPTE
ECCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCC
NA
CC
>Mature Secondary Structure
MQLESLKMFCDVVETGSFSRAAQLNHVTQSAVSQQIRALENRYEQKLLSRSARQVTPTPA
CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
GERLFRGCKEILARFAEVEQEIREQATEVAGTTTVSTIYSVGLHELNSVQKQLLKSHPKV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
NMRLNYRRNDQVYDDVILGAAEIGIVAYPQPRAGVDILPFRDDKLSVVCAPDHPFATKQK
EEEEECCCCCHHHHHHHHHHHHHCEEECCCCCCCEEEEECCCCCEEEEECCCCCCCCCCC
VSLTALSGVPFIAFDREAPTRKALDRLFREKSIDINPVMEMDNVETIKRAVEMGLGVAIL
EEEEEECCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCEEEE
PMSTAQGEVKGGSLVAKPFAEGPVSRPIGLLIRKGKYLDRASAAVLEAFKAASNVPPPTE
ECCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCC
NA
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]