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The map label for this gene is yprB [H]

Identifier: 108758332

GI number: 108758332

Start: 4605020

End: 4606591

Strand: Reverse

Name: yprB [H]

Synonym: MXAN_3832

Alternate gene names: 108758332

Gene position: 4606591-4605020 (Counterclockwise)

Preceding gene: 108758894

Following gene: 108762879

Centisome position: 50.4

GC content: 73.73

Gene sequence:

>1572_bases
GTGGACCTCAAGCGCAAGCTGGCGCGCCTGACGAGCGTGGGCCCCGGGGGCAAGTCACCCCCGAAGCCCCCCGTGGCGGA
GCCACAGGCCGAGCCCGCCGCGCGCGCTGATTCCATGCCCGCGCCTGCGGCCGAAGCGGGCGTACCCGACGCGCTCGCCG
CGCAGTTGGCGAAGTTGGTTCAAGCCCGGCGCATGGAAGCGCCGTCCACGCCCGCCGGCGCGGAATCGCAGGTCGCCCGC
GCGGAGGGCACGGTGGAGGCCGCGGCAGCACGCCCCGTCACGGCTTCGCCTCCAGCCGCCCCCCGAGATCCCCGCATCGA
CAGCCTGCGCCGGATGCTGTCGGACTGGTCGGAGCGTCAGGGTCTGGCCGCCGCGCGCCGGGGCACGCCACCGCCAGCCC
CCCCTGGCCCGCTGCCCGTGGAGTCCCGTGCCACGGCCCACGGCACGGTCCACATCTCCGAGCGCATCCTCTCCCCGGAA
CACCACCACGGCTCCGCGCCTCTCGCCGCGGCCCTGGACGTGGAGGGCCCCCTGGTCGCCAGCCTCGCGCTGCACGCGGA
CCTGGCGGGCGTGGACTTCCAACGGATGCTCTTCCTGGACACGGAGACCACCGGGCTCGCGGGAGGAACGGGCACCGTGC
CATTCCTCGTGGGGCTGGCATGGTTCGAGGGCCGCTCGCTCAAGGTGCACCAGCTCTTCCTGCGGCGCCTGGGAGAAGAG
GCCCCCATGTTGCGCTCGCTCGCCGAGCGCATGGCCGCGTCCTCCTGCCTCGTCACCTTCAACGGCAAGAGCTTCGACTG
GCCGCTCCTGCGGACGCGCTTCGTCCTCAACCGCGTCCCCGCACCCGTGGAGCTGCCCCACCTGGACCTGCTCCACTGCG
CCCGCCGCGTCTTCAAGCACCGGGGCGCCGGCACGCGACTGGTCCACTTGGAAGACCAGGTCCTCGGCTTCCGGCGCGTC
GACGACGTGGACGGCTCGCTGATTCCCGACCTGTACTTCCGCTACCTGCGCGGCGGAGACGGCTCGGCGCTGACGCCCGT
GCTGGAGCACAACGTCAACGACCTCCTCCTCCTGGCGGCCCTGCTCGGTGAGCTGGTCCGCCGCTTCCGAGCAGGGGGCG
CAGACGCCTCCGTGCCCCGGGACGCGGACCCTCGCGACCTGCTCGGCTTCGCGGGCGTGGCGCTCCGGGCCCGCGACTAC
GCGCGCGCCCAGGCCTTCGCTCGGGCCGCCGCGGCGGGGGACACCGGCGCCGTGGGCATCGAAGCCCTGGCCCTGGCCTC
CCGGCTGTCACGCAAGGCGGGTGACGCCTCGACCGCTGCGGCGCACCTGCACCAGGCACTGAAGACCGCCCAGGGCTTCC
AGGCCGCGACGCTGCACCTCCAACTCACCAAGCTGTACGAGCATGGCCTCAAGGACCTCGCGCGGGCGCTGCACCACGCG
AAGCTGGCCTCGGCGGCGGAGCTGCCCGTGGACCACCACCGCCGAATCCTTCGCCTGGAGACGCGCCTGGCCCGGAGCAC
CCGAGCGGCCTCGCTGGACCTGGGAATGGGGAGCCCTCGCTCAGGAACCTGA

Upstream 100 bases:

>100_bases
GGGACAAGCGCCCGTGGACCCGCATCCGCGCAAGCGACTGGCGCTCGAAGTGCTATCGGCGCTGGGCATCGCGGGAATGC
AGTAACCGGGAGGCGCGGCC

Downstream 100 bases:

>100_bases
CGATTCTGGGCTTCCGCACCACTGGAATCGGACAGTCGATCCGGGCGGGACGCTCGCCTCATTGTCAGACAGGCACATGA
TTGAGGCACACGCCACGGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 523; Mature: 523

Protein sequence:

>523_residues
MDLKRKLARLTSVGPGGKSPPKPPVAEPQAEPAARADSMPAPAAEAGVPDALAAQLAKLVQARRMEAPSTPAGAESQVAR
AEGTVEAAAARPVTASPPAAPRDPRIDSLRRMLSDWSERQGLAAARRGTPPPAPPGPLPVESRATAHGTVHISERILSPE
HHHGSAPLAAALDVEGPLVASLALHADLAGVDFQRMLFLDTETTGLAGGTGTVPFLVGLAWFEGRSLKVHQLFLRRLGEE
APMLRSLAERMAASSCLVTFNGKSFDWPLLRTRFVLNRVPAPVELPHLDLLHCARRVFKHRGAGTRLVHLEDQVLGFRRV
DDVDGSLIPDLYFRYLRGGDGSALTPVLEHNVNDLLLLAALLGELVRRFRAGGADASVPRDADPRDLLGFAGVALRARDY
ARAQAFARAAAAGDTGAVGIEALALASRLSRKAGDASTAAAHLHQALKTAQGFQAATLHLQLTKLYEHGLKDLARALHHA
KLASAAELPVDHHRRILRLETRLARSTRAASLDLGMGSPRSGT

Sequences:

>Translated_523_residues
MDLKRKLARLTSVGPGGKSPPKPPVAEPQAEPAARADSMPAPAAEAGVPDALAAQLAKLVQARRMEAPSTPAGAESQVAR
AEGTVEAAAARPVTASPPAAPRDPRIDSLRRMLSDWSERQGLAAARRGTPPPAPPGPLPVESRATAHGTVHISERILSPE
HHHGSAPLAAALDVEGPLVASLALHADLAGVDFQRMLFLDTETTGLAGGTGTVPFLVGLAWFEGRSLKVHQLFLRRLGEE
APMLRSLAERMAASSCLVTFNGKSFDWPLLRTRFVLNRVPAPVELPHLDLLHCARRVFKHRGAGTRLVHLEDQVLGFRRV
DDVDGSLIPDLYFRYLRGGDGSALTPVLEHNVNDLLLLAALLGELVRRFRAGGADASVPRDADPRDLLGFAGVALRARDY
ARAQAFARAAAAGDTGAVGIEALALASRLSRKAGDASTAAAHLHQALKTAQGFQAATLHLQLTKLYEHGLKDLARALHHA
KLASAAELPVDHHRRILRLETRLARSTRAASLDLGMGSPRSGT
>Mature_523_residues
MDLKRKLARLTSVGPGGKSPPKPPVAEPQAEPAARADSMPAPAAEAGVPDALAAQLAKLVQARRMEAPSTPAGAESQVAR
AEGTVEAAAARPVTASPPAAPRDPRIDSLRRMLSDWSERQGLAAARRGTPPPAPPGPLPVESRATAHGTVHISERILSPE
HHHGSAPLAAALDVEGPLVASLALHADLAGVDFQRMLFLDTETTGLAGGTGTVPFLVGLAWFEGRSLKVHQLFLRRLGEE
APMLRSLAERMAASSCLVTFNGKSFDWPLLRTRFVLNRVPAPVELPHLDLLHCARRVFKHRGAGTRLVHLEDQVLGFRRV
DDVDGSLIPDLYFRYLRGGDGSALTPVLEHNVNDLLLLAALLGELVRRFRAGGADASVPRDADPRDLLGFAGVALRARDY
ARAQAFARAAAAGDTGAVGIEALALASRLSRKAGDASTAAAHLHQALKTAQGFQAATLHLQLTKLYEHGLKDLARALHHA
KLASAAELPVDHHRRILRLETRLARSTRAASLDLGMGSPRSGT

Specific function: Unknown

COG id: COG3359

COG function: function code L; Predicted exonuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012337
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55544; Mature: 55544

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLKRKLARLTSVGPGGKSPPKPPVAEPQAEPAARADSMPAPAAEAGVPDALAAQLAKLV
CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHCCCCHHHHHHHHHHH
QARRMEAPSTPAGAESQVARAEGTVEAAAARPVTASPPAAPRDPRIDSLRRMLSDWSERQ
HHHHCCCCCCCCCCHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
GLAAARRGTPPPAPPGPLPVESRATAHGTVHISERILSPEHHHGSAPLAAALDVEGPLVA
CHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHCCCCCCCCCCCCEEEECCCCHHHH
SLALHADLAGVDFQRMLFLDTETTGLAGGTGTVPFLVGLAWFEGRSLKVHQLFLRRLGEE
HHHHHHHHCCCCHHHEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
APMLRSLAERMAASSCLVTFNGKSFDWPLLRTRFVLNRVPAPVELPHLDLLHCARRVFKH
CHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
RGAGTRLVHLEDQVLGFRRVDDVDGSLIPDLYFRYLRGGDGSALTPVLEHNVNDLLLLAA
CCCCCEEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHHH
LLGELVRRFRAGGADASVPRDADPRDLLGFAGVALRARDYARAQAFARAAAAGDTGAVGI
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
EALALASRLSRKAGDASTAAAHLHQALKTAQGFQAATLHLQLTKLYEHGLKDLARALHHA
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHH
KLASAAELPVDHHRRILRLETRLARSTRAASLDLGMGSPRSGT
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCC
>Mature Secondary Structure
MDLKRKLARLTSVGPGGKSPPKPPVAEPQAEPAARADSMPAPAAEAGVPDALAAQLAKLV
CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHCCCCHHHHHHHHHHH
QARRMEAPSTPAGAESQVARAEGTVEAAAARPVTASPPAAPRDPRIDSLRRMLSDWSERQ
HHHHCCCCCCCCCCHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
GLAAARRGTPPPAPPGPLPVESRATAHGTVHISERILSPEHHHGSAPLAAALDVEGPLVA
CHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHCCCCCCCCCCCCEEEECCCCHHHH
SLALHADLAGVDFQRMLFLDTETTGLAGGTGTVPFLVGLAWFEGRSLKVHQLFLRRLGEE
HHHHHHHHCCCCHHHEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
APMLRSLAERMAASSCLVTFNGKSFDWPLLRTRFVLNRVPAPVELPHLDLLHCARRVFKH
CHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
RGAGTRLVHLEDQVLGFRRVDDVDGSLIPDLYFRYLRGGDGSALTPVLEHNVNDLLLLAA
CCCCCEEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHHH
LLGELVRRFRAGGADASVPRDADPRDLLGFAGVALRARDYARAQAFARAAAAGDTGAVGI
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
EALALASRLSRKAGDASTAAAHLHQALKTAQGFQAATLHLQLTKLYEHGLKDLARALHHA
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHH
KLASAAELPVDHHRRILRLETRLARSTRAASLDLGMGSPRSGT
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377; 3145906 [H]